Riemerella anatipestifer RA-GD: RIA_1785
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Entry
RIA_1785 CDS
T02007
Name
(GenBank) Geranylgeranyl pyrophosphate synthase
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
rar
Riemerella anatipestifer RA-GD
Pathway
rar00900
Terpenoid backbone biosynthesis
rar01100
Metabolic pathways
rar01110
Biosynthesis of secondary metabolites
Module
rar_M00364
C10-C20 isoprenoid biosynthesis, bacteria
Brite
KEGG Orthology (KO) [BR:
rar00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
RIA_1785
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
rar01006
]
RIA_1785
Enzymes [BR:
rar01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
RIA_1785
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
RIA_1785
2.5.1.29 geranylgeranyl diphosphate synthase
RIA_1785
Prenyltransferases [BR:
rar01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
RIA_1785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
ADZ12853
LinkDB
All DBs
Position
1785591..1786562
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AA seq
323 aa
AA seq
DB search
MKFLDRYQDLVAEAIEKHQFKNEPKELYEPMNYIISHGGKRLRPIMVLMGCELFGGSLEK
AMKPALAIEFFHNFTLIHDDIMDDAPLRRNKPTIHTLHGINVGILSGDALLIKAYQFFED
LEPELFKKCITLFSETGAVLCEGQQMDVNFETNSNVTYEDYIKMITYKTGVLSAASFKIG
AMIAGATEQEAEALYQFGKHIGIAFQIMDDYLDVFGNQEQFGKKHAGDIFENKKTVLYLL
AMENATEEERKELNYWYSKKTDNIDKIYCVEKIFRRTKVDEKVLRLIQKHNQIGQDCLKT
INLPEDKKQPFIELANYLLKRES
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcttagacagatatcaagacttagtagcagaagcaatagaaaagcatcaattt
aaaaacgaaccaaaagaactctatgagcctatgaattatatcatttctcacggaggaaaa
cgcctgaggcctattatggtactaatggggtgcgagctttttgggggtagtttagaaaaa
gcgatgaaaccagctttggctatagagttttttcataatttcacgcttatccacgacgat
attatggacgatgcgccacttagaagaaataaacctacaatacatacgctacacggcatc
aatgtaggtattctgtcgggagatgcattgctcattaaagcctatcagttttttgaagat
ttagagccagaactatttaaaaagtgtatcactttattttccgaaacgggagcagtgctt
tgcgagggacagcagatggacgttaattttgaaaccaattccaatgttacctatgaagat
tatataaaaatgataacctataaaacgggggtgcttagtgcagcttcgtttaagataggg
gctatgatagcgggagctaccgaacaggaagcggaggcattgtatcaatttggtaaacat
attgggattgcattccagattatggacgactatttagatgtcttcggaaatcaggagcag
tttggtaagaaacacgcgggtgatatttttgaaaataaaaagacggtcctctatctatta
gcaatggaaaatgcgacagaggaagaacgaaaagagcttaactattggtactctaaaaag
acggataatatagataaaatctactgtgtagagaagatttttagaagaacaaaagtagat
gaaaaagtattgagattgatacaaaagcacaaccaaattggtcaagattgtttaaaaacg
attaacctcccagaggataagaaacaaccttttatagagttggctaattaccttttgaaa
agagagtcttag
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