Riemerella anatipestifer RA-GD: RIA_1821
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Entry
RIA_1821 CDS
T02007
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rar
Riemerella anatipestifer RA-GD
Pathway
rar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RIA_1821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rar03019
]
RIA_1821
Enzymes [BR:
rar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RIA_1821
Messenger RNA biogenesis [BR:
rar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RIA_1821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UTP25_NTPase-like
UvrD-helicase
CMS1
DsrH
Utp25_C
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ADZ12885
LinkDB
All DBs
Position
1817469..1818584
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AA seq
371 aa
AA seq
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MNFTQLSLSSPILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLL
QILSETPKKGKSVRALILTPTRELAIQIQENIEQYSKFLNIKHLSIFGGVPQGKQERALN
QGVDILIATPGRLLDLMQQGLLSLSQIEILVLDEADRMLDMGFVNDVKKILTKVPKKRQT
LFFSATMPNSIRQFAETILDNPAEVTVTPVSSTAKTIEQSVYFVEKNDKTNLLINILKDT
SELRSLIFTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKDFKDNRISVLIATD
IAARGIDIDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAISFCGTEERKDLKNIQKL
IGFTMNTAPAI
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgaattttacacaattatcattatcaagccctattttaaaggcaatatctgacgctggt
tacacaacccctactgcaattcaagaaaaagcaattccaaccattttagaaggtagagac
cttatagggtgtgctcaaacgggaactggtaaaacagctgctttctcaattccattattg
caaatattgtcagaaacacctaaaaaaggcaagtctgttagagcgttgattttaacacca
acaagagaactagctattcaaattcaagaaaatatagaacagtatagcaagtttttgaat
ataaaacatctgtcaatttttggaggagtacctcaagggaaacaagaaagagccttgaac
caaggcgtagatattttaatagcaactccagggcggttattagacctaatgcaacaagga
ttgcttagcctatctcaaatagaaattttagttttagacgaagccgaccgtatgctagat
atgggatttgtaaacgatgttaaaaaaatccttaccaaagtgcctaagaaaagacaaacc
ttatttttctcggctacgatgcctaattctataagacaatttgcagaaactatcttagat
aaccccgctgaagttacagtaactccagtatcttctacggctaaaacaatagaacaatct
gtttattttgtagaaaaaaatgataaaaccaacctactgataaatattttaaaagataca
tcagagctaaggtcgcttatttttacaagaaccaaacacggggcagatagattagtaaaa
caattaggtagaacaggaatttttgcagcagcaatacacggcaacaaatctcaaaacgcc
cgtcaaaaagcacttaaagattttaaagataaccgtatcagtgtcttaatcgctacagac
atcgctgccagagggatagatatagatgagctaccacaggtaattaactacgagcttccc
aatgtgccagaaacttatgtgcatagaataggtagaacaggtagagcaggaacttcaggg
aatgccatttcgttttgtggaacggaagaaagaaaggatttgaagaatatacaaaagctg
ataggcttcacgatgaacactgcacctgcaatctaa
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