Riemerella anatipestifer RA-GD: RIA_1965
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Entry
RIA_1965 CDS
T02007
Name
(GenBank) Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
rar
Riemerella anatipestifer RA-GD
Brite
KEGG Orthology (KO) [BR:
rar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rar03032
]
RIA_1965
03400 DNA repair and recombination proteins [BR:
rar03400
]
RIA_1965
Enzymes [BR:
rar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
RIA_1965
DNA replication proteins [BR:
rar03032
]
Prokaryotic type
DNA Topoisomerases
RIA_1965
DNA repair and recombination proteins [BR:
rar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RIA_1965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Motif
Other DBs
NCBI-ProteinID:
ADZ13017
LinkDB
All DBs
Position
1962945..1965470
Genome browser
AA seq
841 aa
AA seq
DB search
MHKEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSN
KKYLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAM
RYTEARLKKISDEILSDLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMAT
NMAPHNLSESVDAICAYIDNKNIEIDELMKYIIAPDFPTGGIIYGYDGVRDAFHTGRGRI
VLRAKVAFEEIGNRNAIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMR
VVYELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVKGRPQQLNLKDIIVHFVEHRHEIV
IRRTQYELKKARERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLIAEFELSDI
QAQAILDLRLARLTGMELDKIRDEYKAIMDLINDLEDILANEARCYQIIKDELLEVKEKY
GDERRTEIDYSGGEMSIEDFIPNEEVVLTISHAGYIKRTLLSEYKTQSRGGVGNRAASTR
DEDFLEYIVSATNHQYMLFFTEKGKCYWLRVFEIPEGSKTAKGRAIQNLINIEPDDKIKA
YIRTNDLKDSEYVKQMYVVMITKNGTIKKTSLEAYSRPRTNGIHAIEIREDDQLLGARLT
NGNSEIMIATKNGKCIRFPEEKARAVGRTSIGVRGISLEDNDEVIGMIVVNDMENETVLV
VSEKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGQLIAIQSVVDGNDLMIINKSGVAIR
MSVDNMRVMGRNTQGVRLINLKNNDEIAAVAKVEAEKDVEDEEIEESNDEAVNPSEGNSE
E
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgcataaagaaggagaaaggttgatacctatcaatattgtggacgaaatgaagtcctct
tatattgactactcaatgtccgttattgtatctcgtgccttgccagatgtaagggacgga
ttaaagcctgtacatcgtagggttttgtatggtatgtatggattgggagttttttcaaat
aaaaaatatttaaaatctgccagaattgtaggagatgttttgggtaaatatcacccacat
ggtgatagctccgtttatgacgctatggtgcgtatggcacaaccgtggagtttaaggtat
ccgcaagtagatggtcaaggtaactttggttctatggacggtgacccaccagcagctatg
cgttataccgaagccaggctgaaaaaaatatccgatgaaattctatcagacttagataaa
gaaactgttgattttcaaaataacttcgatgatagtttacaggagcctacagtgttgcct
actaaaatacctaaccttttagtaaatggtacttctggtattgcggtaggtatggcaact
aatatggcgcctcataacttatcggaatcggtagatgctatctgtgcctacatagataat
aagaatatagaaatagatgagttgatgaaatacatcatcgctcctgacttccctacggga
ggaattatctacggctatgatggagttagagatgcgttccatacaggaagagggcgaatt
gtattaagagctaaagtcgcttttgaagagattggaaaccgtaatgctattatcgttacc
gaaatcccttatttggtgaataaagctgaaatgatagctagaacatcagagttggtaaaa
gaagataaaatacaaggtattcacgagattagagatgagtctgataggagaggtatgcgt
gtggtttacgaacttaaaaacgatgcaatacctaatgtagttcttaacctattgtataaa
tatacggcgttacaaacttcgtttagtgttaataatattgctttagtaaagggtagacca
caacagcttaacctaaaagatattatcgttcactttgtggagcaccgccacgagattgta
attcgtagaacccagtatgagcttaaaaaagcaagagaaagagctcatattttagaaggt
tttatgaaggttattgcaactcaagacactttagataaagcaatttctatcattagacat
tcagcaacgccacaggctgctaaagaaggattgattgcagagtttgaactttcggacata
caggctcaagccatcttagatttaagattagctaggcttacaggtatggagttagataaa
atccgtgatgagtacaaagctattatggatttaattaacgacttggaagatatccttgct
aacgaagctagatgctaccaaatcattaaagatgagttgctagaagttaaagaaaaatat
ggtgatgaaagaagaacggaaatagactattctggaggtgaaatgtccatagaagacttt
attcctaatgaagaagtggtacttactatttctcacgctggatacatcaagagaaccctc
ctttcagaatacaaaactcagagtagaggtggagtgggcaaccgtgcggcatctacaaga
gacgaagatttcttagaatacattgtttctgctaccaatcaccagtatatgctattcttt
acggaaaaaggtaagtgctactggttgagagtatttgaaattcctgaaggctccaaaaca
gctaaaggtagagcaatacagaacttaatcaatatagaacctgatgataaaatcaaggct
tacattagaaccaatgatttaaaggactctgagtatgttaagcagatgtatgtggtaatg
attaccaaaaacggaactatcaagaaaacttcattagaggcttattctagacctagaacc
aatggtatccacgccatagaaattagagaggacgaccagcttttaggagcaagacttact
aacggtaactccgaaataatgatagcgactaaaaatggtaaatgtatccgtttcccagaa
gagaaagctagagcagtaggtagaacttccattggcgtaagaggtatttctctggaagac
aacgatgaggtaattggtatgatagttgtaaacgatatggagaacgaaacggttttagta
gtttctgaaaagggctatggtaagagaactgcggtagaggattatcgtgtgactaaccgt
ggaggtaaaggagtgattaccctcaatattaccgaaaaaacgggacaacttattgcgata
caatcagtagtagatggtaacgatttaatgattatcaataaatcaggagttgcaataaga
atgtcggtagataatatgcgtgttatgggtagaaatacccaaggtgtaaggctaattaat
cttaaaaataatgatgaaatagcagccgtagcaaaagtggaggcagaaaaagatgtagag
gacgaggagatagaagaatctaatgatgaagctgtaaatccgtctgaaggaaattcagag
gaatag
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