Rhodamnia argentea (silver malletwood): 115727140
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Entry
115727140 CDS
T10595
Name
(RefSeq) vacuolar sorting protein 18
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115727140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rarg04131
]
115727140
Membrane trafficking [BR:
rarg04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115727140
Hops complex
115727140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_11
zf-RING_Vps41
zf_RING_Vps8
zf-rbx1
zf-RING_UBOX
zf_RING_Vps8_fungal
Nup54_57_C
RPN1_RPN2_N
zf-C3HC4
zf-RING_2
TXNDC16_2nd
TPR_IFT121
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
115727140
NCBI-ProteinID:
XP_030513165
UniProt:
A0A8B8MSU9
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Position
7:complement(5343560..5359598)
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AA seq
986 aa
AA seq
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MDQARQVFSVDLLERFAAKGRGLITCMAAGNDVIVLGTSKGWVIRHDFGVGDSHEFDLTV
GRPGEQSIHRVFVDPGGSHCIASLTGSGGPDTFYIHAKWSKPRILSKLKGFVVNAVAWNR
QQITEASTKEVILGMDNGQLHEMAVDEKDKREKYIKFLFELSELPEAFTGLQMETASVST
GTRYYLMAVTPTRLYSFTGIGSLEAVFAKYLDRAVHFMELPGEIPNSELHFFIKQRRAVH
FAWLSGAGIYHGGLNFGATHSFPDGDENFLENKALLDYSRLCEGSEALKPSSFAVSEFHF
LLLIANKVKVVNRISEQIIEELQFDQTSESLSRGIIGLCSDATAGLFYAYDQNSIFQVSV
NDEGRDMWKVYLDIKDYAAALANCRDQLQRDQVYLVQAEAAFASREFLRAASFFAKINYI
LSFEEITLKFIGVGEQDALRTFLLRKLDNLTKDDKCQITMISTWATELYLDKINRLLLED
DTALENRNSECYAIIKEFRAFLSDCKDVLDEATTMKLLESYGRVEELVYFASLKEQYEIV
VHHYIQQGEAKKALEVLQKPAVPIDLQYKFAPDLIMLDAYETVESWMTRKDLNPRKLIPA
MMRYSNEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKF
GKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDPELAMAEAD
KVEDDEDLRKKLWLMVAKHVVEQEKGAKRENIRRAIAFLKETDGLLKIEDILPFFPDFAL
IDDFKEAICSSLEDYNKQIEQLKEEMNDATHGADNIRNDISALAQRYAVIERDEECGVCR
RKILTVSGEYRMTRGYTSTGPMAPFYIFPCGHAFHAECLIAHVTRCTNESQAEYILDLQK
QLTLLGSETRRDQTGGLNEESITSLTPAEKLRSQLDDAIASECPFCGDLMIREISLPFIL
PEEAQQVTSWEIKPNLANQRSLSLPV
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagcgaggcaggtcttctcggtcgatcttctcgagagattcgcggccaagggg
cgtggtttgatcacctgcatggccgctggtaacgacgtgatcgtcttggggacaagcaaa
ggatgggtcatcaggcacgacttcggagtcggagattctcacgaatttgatctcacggtg
ggtcgtcctggggagcaatctatccacagggtttttgttgatcctggaggaagccactgt
atcgccagtctaactggcagtggtggtccggacactttttatatccacgcaaagtggagc
aagccccgcattctaagcaaattaaaaggttttgtagtgaatgcagttgcatggaataga
cagcagataacagaagcttccaccaaggaagttatcctgggaatggacaacggccaactt
catgagatggcggtggatgaaaaggacaaaagggagaaatatatcaaatttctgtttgag
ctgtcagaacttccagaagcattcactggcttgcagatggaaacagctagtgtaagcacc
ggaactagatattatctgatggctgttacgccaacgcggctctattctttcacagggatt
ggatcactggaagctgtttttgccaaatatttagatcgcgctgtgcatttcatggagctt
ccaggagaaatacctaacagtgaactgcatttcttcatcaagcaacgaagggctgtacat
tttgcctggctttccggagctggtatttaccatggcggcttaaattttggtgcaacacac
agttttcctgatggagatgagaactttctggagaataaggcacttttggactattcgaga
ctttgtgaaggttctgaggcacttaaaccgagttcttttgcagtgtctgagtttcatttt
ttgcttcttatcgcgaacaaagttaaggttgtaaacagaatcagtgagcagataattgag
gaacttcaatttgatcagacgtcagagtcactttcaagaggtataattggattatgcagt
gatgccactgctgggttgttttatgcctatgaccagaattccattttccaggtgtcagtt
aatgatgaagggcgagatatgtggaaggtgtatctggacatcaaggattatgctgcggct
ttagcaaattgtcgtgaccagcttcaacgcgaccaagtttatctagttcaggctgaagca
gcatttgcctccagggagtttcttagagcagcatccttctttgcaaaaataaactacata
ttgtcattcgaggagatcacactgaaatttattggcgtaggagaacaggatgctctcaga
acttttttgttgaggaagcttgataatcttacaaaggatgacaagtgccaaatcactatg
atttcaacttgggctactgaactgtacttggacaagataaaccggttgctcttagaagat
gatactgccttggaaaaccgtaattcggagtgctacgcaattattaaagaattccgtgct
tttctaagtgactgcaaggatgtattggatgaggcaacaacaatgaaacttctggaaagt
tatggtagggttgaagagcttgtgtattttgccagtctgaaggagcagtatgagatagta
gttcatcattacatacagcaaggagaagcaaagaaagcattggaagtgcttcagaaacct
gctgttccaattgaccttcagtataagtttgctccggacctaatcatgcttgatgcctat
gaaactgtggagtcatggatgacaagaaaagacctaaatccaaggaagcttatccctgca
atgatgcgttactcaaatgaacctcatgcaaagaacgaaactcatgaagtcataaaatat
ctggagttctgtgtccatcgtctgcataacgaggatccaggcgtgcacaacttacttctt
tcgttgtatgctaagcaggaagatgatagtgcacttctgcgctttctgcaatgcaaattc
ggaaaaggacgagaaaatggcccagaattcttttacgatcccaagtatgccttgcgactt
tgcctcaaagaaaagcgaatgcgcgcctgcgttcatatatacagtatgatgtctatgcat
gaagaagcagttgctcttgctctgcaggttgatcctgagcttgctatggctgaagctgac
aaagttgaagatgatgaagatttgagaaagaagctttggcttatggttgccaagcatgtt
gttgagcaggaaaaaggagcgaagagggaaaacattcggagagcaatagcatttctcaaa
gaaaccgatggtcttttaaagatagaggatatattgccattttttccagacttcgccctt
attgacgacttcaaggaggcaatatgttcatcactggaggattacaacaaacaaattgaa
cagctgaaagaggagatgaatgatgcaacgcatggtgcagacaatatcagaaatgatata
agcgcacttgctcaaagatatgctgtcattgaacgtgacgaggaatgtggggtttgccga
cgtaaaattctgacagtgagcggggagtatcgaatgactcggggttatacgtcaactgga
ccaatggctcctttttatatttttccatgtggacatgctttccatgcagaatgtttgata
gctcatgtcacacgttgtactaacgaatcccaagcagagtacatattagacctgcagaag
caacttaccctattgggtagtgaaacccggagagatcaaactggtggcctcaacgaagaa
tccatcacgagcttgaccccagcagagaagctgcggtcacagttggatgatgccattgcc
agtgaatgccctttctgtggtgacttgatgatccgcgagatttctttgccttttattctt
ccagaagaagcacaacaggtcacttcgtgggagataaaacccaatcttgcaaatcaaagg
agcctctctttacctgtttaa
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