Rhodamnia argentea (silver malletwood): 115727412
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Entry
115727412 CDS
T10595
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X10
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115727412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115727412
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115727412
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115727412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
115727412
NCBI-ProteinID:
XP_030513486
UniProt:
A0A8B8MTS1
LinkDB
All DBs
Position
3:complement(26291883..26319744)
Genome browser
AA seq
2418 aa
AA seq
DB search
MLKFSDIVSNQIRFLLESVDESNLDSVLRELYQFLGYGVEGSILLLQTCLDYLNLHWAEL
NAHAKAALVSIFKYILEKPNFSTVFCLSLKSGVLSEAFLENLSDTLCLSLCEKISIGLAL
SSSENLEIRKCGKNFCMAQIEELSANPASLKAAEQIQGVILFLQHSEDLCKHVDSFMQML
SLVQPKDVASFILTPLLSDELRDVNTMRSLDLLYDCKEDDFDAILAEMEKEIGMGDVMRE
LGYGCTVNDLQCKETLSLFSPLTEVTLSRIIGTIARTHIGLEDNHGTASSFAMALGNSSW
SDLPSPSSWNIDILVDSIKQLAPGINWASVIENLDHEGFYLPNEEAFSFFMSIYRCACQD
PFPLKAICGSIWKNVEGQISFLKYAVSAPPEVFTFAHSGRQLAYVDAINGHKLQLGHANH
AWLCLDLLDVLCQIAEAGYAGPVHAILEYPLKYCPEVLLLAMAHINTVYNLLQSEISLAV
FPMIMKNMGGVGMILYLWHVNPILVLRGFVDAASLDPDCMTRILDICEELKILSQVLEMI
PSSFGIRLAALASRKELIDLESWLNNNLSTYKHIFFEECLQFLKLMESGESVDITAKGSL
HSGGLLNLYLDATPIFFKTLVAHASSISSHQHLEELEKLRIALTTSTMRLQNGGTADSAS
SEEYAEDIEAEANSYFQQMFSGQLMIDAMVQMLTRFKESSVKREQAIFECMIANLFEEYK
FFPKYPEMQLKIAAVLFGSVIKHQLVTHLTLGIALRCVLDALRKPPDSKMFVFGTKALEQ
FVDRLIEWPQYCNHILQISHLRGTHSDVVAFIERTLARISSGHSDPDGDNNPASVHHGPP
QYGAANMEVNSTSGVLAGQQLPSPFQLQHRQEAPLDDRHRTHASSVMEVKPVVPAAGRPP
SSTLGESSNIQKTQNAGSTAVTLSSSPGFVRPSRAAASARFGSALNIETLIAAAEKRDTP
IEAPASEVQDKISFIINNISVANIEAKAKELTEILKEQFYPWFAQYMVMKRASIEPNFHD
LYLKFLDKINSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN
QVLRAREIDPKSLIIEAYEKGKMIAVIPFTSKVLEPCQNSLAYQPPNPWTMGILGLLAEI
YLMPNLKMNLKFDIEVLFKNLGVDLKDMTPTSLLKDRIREVEGNPDFSNKDVAATQPQIL
ADVKSGIISPINQVELPLKIASPSDSSGHTHLLSQFAAPLQLSSGALIEDEKLAALGLSD
QLPSAQGLLQAAQSQSTFSVSQLPSPILNIGTHVIINQKLTGLGLHLHFQRVVPIAMDRA
IKEIVPGIVQRSVSIATQTTKELVLKDYALESDETRIYKAARKMVASLAGSLAHVTCKEP
LRASISNQLKNSLQALNISAELLDQAVQLATNDNLDLGCAVIERAAADKAIQTIDGEISQ
QLNLKKHREGVAPAYFEAPVFAQGSMGILPEALRPKPGHLSLSQQRVYEDFDRLPWQNHS
NQSSHSLPSGHSASSGGSLPSTTYDIVSGQLSGYAPSYMNSGAEAVSRQLDLPSEGIEAN
SAPFLSVSSTQIGTVDGATHSSDKNAVTAALPLSASVSELNSEETSSAMKDTVPPQPLPS
PVPSERIGNSISEPSLQPRDALDKYQIVAQKLEDLMTNDARDVEVQRIIAEVPEIILRCR
GRDEAALAVAQKVFKGLYENPSNDFLVSAHLAILAAIRDVCKLVVKEVTSWVIYSDEERK
FNKDIILGLIHSELLNLAEYNVHMAKLIDGGRNKVATEFAVSLLQTLAIEESSVVSELHS
LVEALAKLATKPGMPESLQQLVEVLKNPGANANVFASVTIGKEDKTKQFKDKKAPGPTAI
GRDEYNTVDAVEPDPAGFGEQASLRFAEWYRICELPGSNDAACSHYFIQLYQSGLLKVDD
MTDRFFRALTHIAVSHCVSSEVINSSTTQSPQQVHNLSFLAIDTYAKLVFSAVKYCPMDQ
GSSKHALFSRILAVTVRYIQKDAEEKKTSFNPRPYFRLFINWLLDFNSQDPAIDSAHFQI
LTAFANAFHALQPLKVPAFSFAWLELVSHRSFMPKILSGNSQKGWPYFQRLLVDLFQYME
PCLRNVVLGLPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAF
PRNMRLPDPSTPNLKIDLLAEITQSPRILSEVDASVKAKQMKADIDEYLKTRPQGSPLLT
DLKQRLLLPPSEASVSGTRYDVPLMNSLVLYVGMQAIQQLQSRSPHAQTSVNPASLAVFL
IGAALDIFQTLILELDTEGRYLFLNAIANQLRYPNTHTHYFSFVLLYLFAEANQQEIVQE
QITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWIRSFIRCAPEIEKLFESVARSCGG
PKTVDESVGSGWISDSAH
NT seq
7257 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagttctcggacatcgtctcgaatcagattcgtttcctgctcgaaagcgtcgac
gaatccaacctcgactccgtcttgcgcgagctctaccagtttcttggctatggcgttgaa
ggaagcattttactgctccaaacctgcctggattacctgaatcttcactgggcagagttg
aacgcgcatgcgaaagctgctttagtgtcaattttcaagtacatcttggagaagccgaac
tttagcacggtcttttgtctttcattaaaaagtggagtgctgagtgaagcttttctggag
aatctttctgatacattatgcttatccctgtgtgaaaaaattagcattggtcttgctttg
tcaagttctgaaaatcttgaaattaggaagtgtgggaagaacttttgtatggctcagatt
gaggaattgtctgcaaatccggcttctttgaaagctgctgagcagatccagggagttatt
ctgttccttcagcactcagaagacctatgcaagcatgtagattctttcatgcagatgttg
tctctggtgcagcctaaagatgttgcctcattcattttaacccctttactttcagatgaa
ttgcgtgatgtcaatacaatgaggagcttggatctactgtatgattgcaaagaagatgat
tttgatgctatcttggcggaaatggagaaggagattggcatgggagatgtcatgagggag
ttaggttatggctgcacagttaatgacttgcagtgtaaagagaccttatctctgttttct
cctctaaccgaagtcactctctctagaataattggtactatcgcccgtactcatattggt
ttggaagataatcatggcacagcttcgagttttgctatggcacttggcaacagcagttgg
tctgatcttccatctccaagctcttggaacattgatattcttgtagattcaatcaagcag
cttgcgcctggaatcaattgggcatcagtaattgaaaacctggatcatgaaggattctac
ttgcctaatgaggaagcattttctttcttcatgtctatttatcgatgtgcttgtcaggat
ccttttcctctcaaggccatatgtggttctatctggaagaatgttgagggccagatatca
ttcttaaaatatgctgtgtcagctcctcctgaagtatttacctttgcacattctgggagg
cagctggcttatgttgatgcgataaatggtcataaactccagcttggacatgcaaatcat
gcttggttgtgccttgacctcctagatgtgttgtgtcaaattgctgaggctggttacgct
ggacctgttcacgctattcttgaataccctcttaaatactgtccagaagtcttgcttctt
gcaatggcacatattaatactgtatataatctcctgcagtctgaaatctcccttgccgtt
tttcccatgataatgaaaaacatggggggtgttggcatgatcctttacctctggcacgtt
aacccaattcttgtgttgagggggtttgttgatgctgcaagtcttgatccagactgcatg
actagaatactggacatctgcgaagagcttaagatactttcccaagttctagagatgatt
ccttcttcctttggcatcagactggctgcccttgcttcacgaaaggaactcatagacctt
gaaagttggttgaacaataatctgagtacttacaagcacattttctttgaggagtgtctt
caattcctgaagcttatggaatctggtgaatcagtggatattaccgccaagggctctctg
cattctggcggtcttttgaatctctatctggatgcaactcctatcttcttcaagacgctt
gtggctcatgcgagctcgatctcatcccaccaacatttggaggaattggagaaattgcgt
atagcacttacaacctcaactatgaggcttcaaaatggtgggactgcagattcagcgtcc
tctgaggaatatgctgaggacatagaggcagaagcaaattcatatttccagcaaatgttt
tctggccagttaatgattgatgccatggttcaaatgctgactcggttcaaggaatcttct
gtgaaaagggagcaagctatttttgagtgcatgatcgccaacctatttgaggaatataag
ttttttcccaagtatccagaaatgcaacttaaaattgctgctgtactgtttggctctgtc
atcaagcaccaacttgtaactcatctgacgctcgggattgccctacgttgtgttttagat
gcgcttcgtaagcctccagattcaaagatgtttgtatttggaaccaaggcattggagcag
tttgtggatcgattaattgaatggccacagtattgcaatcatattctacaaatatctcat
cttcggggcactcactcagatgttgttgcttttattgagagaactcttgcgcgaatatca
tcaggtcattcagatcctgatggagacaataatcctgctagtgttcatcatggtccacct
caatatggcgctgcaaatatggaggtgaatagcacttcgggcgttcttgctggacagcaa
cttccttcaccattccagcttcaacacagacaggaagcacccctggacgacaggcatagg
actcatgcatcttcagtaatggaggtgaaacctgtggtacctgcggcagggagacctcca
tctagcacgttaggtgaatcttcaaatatccagaagacccagaatgcagggagtactgct
gtaacattgtcttcatcacctggttttgttcgtccttcaagggctgctgcttccgcccga
tttggctctgctttgaacattgagacactcattgctgctgctgagaaacgagatactcct
atagaggctccagcatcagaagttcaagacaagatatcattcattatcaacaacatttca
gtggcgaatattgaagctaaagcaaaagagttgactgaaattcttaaagagcagttctac
ccatggtttgcgcagtacatggtcatgaaaagagcaagcattgaaccaaattttcatgac
ctttacttgaagtttttggacaaaatcaattcaaaggccttaaataaagagattgttcaa
gcaacttatgagaactgcaaggtccttctaggatctgagcttataaaatcaagttcagaa
gagcgctcactattgaagaacttgggtagctggcttgggaaattaaccattggcaggaat
caagttttaagggctcgcgaaatagatcccaaatcattgattattgaggcatatgagaag
ggtaaaatgattgcagttatcccatttacttcaaaggttcttgagccctgccaaaacagt
ctagcctaccaaccacctaatccttggaccatggggattcttggattactagctgaaatt
tatctgatgccgaacttgaaaatgaacctcaaatttgatattgaggtcctgttcaaaaat
cttggggtggatttgaaggacatgacacctacgtcacttctgaaggatcgtataagagaa
gttgaaggaaaccctgatttttcaaacaaagatgttgccgcaacccaaccacagattctt
gcggatgttaaatctggaattatatcaccaataaatcaagtggaattacctctgaagatt
gctagtccatctgattctagtggccatacacacttattgtctcagtttgctgctcctctt
caactatcatctggtgcactgatcgaggatgaaaagttagcagctttaggtttgtctgat
caactcccctctgctcaaggactcttacaggctgcccagtcccagtcaacattctctgtc
agtcagctgccttctccaattcttaacattggaactcatgttatcatcaaccaaaagtta
actggtcttggcttgcatttgcatttccagagggtggttccgatagcaatggacagagct
atcaaggagatagtacctgggattgtgcaacgtagtgtttccatagcaactcaaacaaca
aaggaacttgttttaaaggattatgctctggagtcagatgagacaagaatctataaagca
gcgcgaaaaatggtcgccagccttgctggaagtctagctcatgtgacatgcaaggaaccg
ttgcgtgcttcaatatcaaatcagctaaaaaattcgcttcaggccttgaatatatctgcc
gaacttcttgaccaggctgttcaactggcaaccaatgataatcttgaccttggttgtgca
gtcattgaacgggctgcagctgataaggcaattcaaaccatcgatggtgaaatctctcaa
caacttaacctaaagaaacatagggagggtgttgctccagcatattttgaagcccctgta
tttgctcaaggttcaatgggcattctcccggaggctctccgccccaagcctggtcatttg
tccctatctcaacaacgggtttatgaggactttgataggcttccctggcaaaaccattcg
aatcaaagttcacattcactgccttcaggacattcagcttcatctggaggttctctacct
tctactacatatgatattgtgtctggacaattatctggctatgctccatcctacatgaac
tccggagctgaagcagtttctcgtcaattggatcttccttctgaaggaatagaagctaat
tcagctccatttctcagtgtgtcctcaactcaaattggcacagtggatggggctactcat
agttctgacaaaaatgcagttactgctgcactgcctttgtctgcatctgtgtctgaattg
aattcagaagaaacctccagtgctatgaaagacactgttcctccacagccattgccctca
cctgtgccttctgagcgcattggaaatagcatatcagaaccttcattgcagccaagggat
gcattagacaaataccaaatagttgcacagaagttggaagatttgatgactaatgatgct
agagatgtagaagttcagagaataattgctgaagttcctgagatcatactacgctgcaga
ggtcgagatgaggctgctttggcagtagctcaaaaggttttcaagggtttgtatgagaac
ccatcaaatgactttcttgtcagtgctcatcttgcaattttggctgccatcagagatgtt
tgtaaacttgtggttaaggaggttacaagctgggtaatatactcagatgaggagcggaag
ttcaataaagatattattctgggactgatccatagtgaattgctaaacctcgctgagtac
aatgttcacatggcaaagctgatagatgggggcaggaataaggtggctacagagtttgct
gtttctcttctgcaaactctagcaattgaagaatctagtgttgtttctgagctccatagt
cttgttgaagcattggcaaagcttgcgacaaagcctggaatgcctgagtcattacagcag
ctggttgaggttttgaagaatcctggcgctaatgcaaatgtctttgctagtgtcactatt
ggaaaggaggataagaccaagcaatttaaggacaaaaaggctcctggccctaccgccatt
ggtagagatgagtacaacactgttgatgctgtggagcccgatcctgctggctttggtgag
caggcatccttgcgatttgcagaatggtacaggatatgtgaacttcctggttcaaatgat
gctgcttgttcacattatttcatacagttatatcaaagtggacttcttaaagttgatgac
atgacagatcggtttttccgtgctctaacgcatattgctgtgtctcattgcgtttcttct
gaagtgatcaattcaagcactacacagtcacctcagcaagtacataatctttcattcctt
gcaatcgacacatatgcaaaacttgtcttttcagctgttaagtattgtcccatggaccaa
ggatccagcaagcatgcacttttttcacggatactggctgttaccgttagatatatccaa
aaggatgcggaggagaagaaaacttcttttaatccgagaccgtatttcagattgtttatc
aattggctgctagacttcaattcccaagatcctgctattgatagtgcacattttcagatt
ttgacagcgtttgcgaatgcattccatgctttgcagcctctgaaagttccagctttcagc
tttgcatggcttgaactggttagtcacaggagttttatgccgaagattctctcagggaac
tctcagaaaggttggccttacttccagcggctgctggttgacttgtttcagtacatggag
ccatgcttgaggaatgttgtacttggtttgccggttcattttctgtataagggaacgctt
agagtgctgcttgtgctgcttcatgattttccagagttcctttgtgattatcattttaca
ttttgtgatgtgattcctcctagctgcatccaaatgcgaaatatcatccttagcgcattt
cctcgcaatatgaggcttccggatccatctactcccaacttaaagattgatttgcttgct
gagatcactcaatcacctcgcatcctttctgaagttgatgcttctgtaaaagcaaagcag
atgaaggctgatattgatgagtatctgaagacaaggcctcaaggatcaccattgttgact
gatctgaagcagagattactgcttccaccaagtgaagcctcagtctctggcaccagatat
gacgtgccgttgatgaattctcttgttctttatgttgggatgcaggccattcaacagcta
cagtcgaggagtccgcatgcacaaacatcagtaaatcctgcttcgctggctgttttcctg
atcggtgcagcactggatatttttcagaccctaatactggagttggatactgaaggacgc
tatctctttctaaatgcaattgctaatcaactgcgttacccaaatacccatacacactac
ttctcttttgtcctcctctacttatttgcagaagcgaatcagcaagagattgtccaagag
cagattacgagagttttgtttgaacgcctgattgtgaaccgccctcatccctggggtctt
cttataacctttatcgaactcatcaagaatccgcgatacaacttttggatccgatccttc
atacgctgtgctcctgagattgagaagctttttgaatccgttgcgagatcatgcgggggt
ccgaaaactgtggacgagagcgtaggctctggttggatatctgacagcgcacactga
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integrated database retrieval system
