Rhodamnia argentea (silver malletwood): 115727909
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Entry
115727909 CDS
T10595
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115727909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115727909
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
115727909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_14
TPR_17
TPR_16
TPR_8
TPR_CcmH_CycH
TPR_20
TPR_7
BTAD
T7SS_EccA1_N
RIC1
Motif
Other DBs
NCBI-GeneID:
115727909
NCBI-ProteinID:
XP_030514117
UniProt:
A0A8B8MVJ8
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Position
2:30084683..30096001
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AA seq
1192 aa
AA seq
DB search
MMGKTDEEEAVVLRQLEESVDAHPDDPELRFQLGLCLWERAAGLKEKMERAAEHFVKSAK
LDPNNATAFKYLGHYYGRVASDGAQRAVKCYQRAVVLNPDDQESGEALCDLLDEGGKETL
EVAVCKEASEKSPRAFWAFRRLGYLQVHQKRWSEAVPSLQHAIRGHPTCSDLWEALGLAY
QRLGMYTASIKSYGRAIELEETRVFAQIESGNIFMMLGSFRKGIEQFRQALDISPENLSA
YYGLCSGLLGLAKECINTGAFTWAASLLEEASKVANVSTQLTGNESSLWKMYGDIQIAYG
TCFPWMIDDQHLALEADAFKSSIHSWSETCYAAAESARISYQKALRLAPWQANIYADIAM
SLDLKYKLIKISAHKSDSWQLPEKMALGALLLEGDNHEFWVALGCLSDNHALKQHCLVRA
LQLDVSLAVAWAYLGKVYRKVADKQLARQAFDSARSIDPSLALPWAGMSADFRAGEDESE
DAFQGCWRAVQTLPLPEFQIGLAMLSLPSGHSPSSQVFGAICQAVQRAPYYPESHNFKGL
ICEARLDYQSAAASYRLARLAIKSFSTTLPESSVRDVTINLARSLLKAGDALEAAQECEA
LKTQGTLDAECLQLYALSLWQLGNNELALSVTRNLAGSISSMEKATATAIAGFICRLLYF
ISGMDSAINSILKMPKELFRSPKVSFILSGIHALDKNNRLNQIVSVSRQFLSSLEEMEAM
HFLIALGKLVKNESEPGLGYQTGIHHLQKAVHMYPSSNLLRQLLGYLLLSSKEWNDSHLA
TRCSVISSFEIPRKEGFKSSFEILGAGAVACYAIGNSNPKFSFPTCTYQCLQEPQAIQQL
QKCLRQEPWNHSAQYLLILNLLQKAREERFPQHLSGILNRLIRVALSNELYARTSTCYPY
RKFQLLLSASESCFQEGRQVECITHATNASRLPLPNGYLFFAHLILSRAYAVAGDLKSSH
KEYERCLDLGTNFHIGWVCLKFMEVHYEMQIDSSKIDSRFYECLKERGHSNVMWGAIFYL
ARGLISLWNHDFLSAEDFLERACSLMDSDSGISLCFGVACVELAKLGYGSQFLSLALRHL
AKAQETALVPLPVVSTLRAQAEGSLGSKEKWESNLCLEWFTWPPEMRPAELFFQMFLLAK
DVQSARDSTSSMVACQSPQKWVCRAIHTNPSCLRYWKVLQRLVETDRTLIST
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgatgggaaaaacggacgaggaagaagcagtcgttctgaggcagttggaggagtcggtg
gatgcccatccagacgaccccgagcttcgcttccaacttggactgtgtttatgggagaga
gcagcgggtttgaaagagaaaatggagagagcggcagagcatttcgtgaaatcggctaaa
ttggaccctaacaatgcgactgcgttcaaatatttgggccattactatggtagagtggcc
tctgatggtgctcagagagctgtcaagtgttaccagagagccgttgttctcaacccggat
gaccaagaatctggggaggcattatgtgatttgttggacgaaggaggaaaggaaactttg
gaagtggcagtttgcaaagaagcatcggagaagtcgccaagggctttctgggcttttcga
agattgggttatctgcaggttcatcaaaagagatggtctgaggctgtgccgagtcttcaa
catgctattcgaggccaccctacctgttctgatttgtgggaagcattgggtcttgcatat
cagcgtttaggcatgtatactgcttccattaagtcttatgggcgggccattgaactggaa
gaaaccagggtttttgcccagattgaaagtggaaacatcttcatgatgcttggttctttt
agaaagggaattgaacaatttcggcaagctctggacatttcacctgaaaatttgtcggca
tactatggactctgttctggcctgcttggtctggcaaaagaatgtatcaacacaggagcg
tttacatgggctgcttcactcttggaggaggcatcgaaagttgcaaatgtgagtactcaa
cttactggaaatgaatcatctctttggaagatgtatggtgatattcagattgcatacggc
acttgctttccatggatgattgacgaccagcatttggcgcttgaagcagatgcattcaaa
tcttctatacattcttggagtgagacttgttatgcagcagcagagtcagcccggatttcg
taccagaaagctttgcgcttggcaccatggcaagcaaacatctatgccgatattgctatg
agtcttgatctgaaatacaagttgatcaagatttccgcacacaaatctgattcttggcag
ttaccggagaagatggctttgggagcattgctgcttgagggggataatcatgagttctgg
gtggcattgggatgtttatcggataatcatgcgttgaaacaacattgtttggtcagagca
ttgcagttagatgtatctctggctgttgcttgggcataccttgggaaggtctatagaaaa
gttgcagataagcaacttgcaaggcaagcatttgatagcgctagaagcatagatccttct
cttgcattgccatgggcaggcatgtcagctgattttcgtgccggggaagatgaatctgaa
gatgcttttcagggctgttggagagctgtgcagacgctgccgcttcctgagttccaaata
gggctagcaatgctttctctaccttcagggcattccccatcttcacaggtttttggagcc
atctgtcaagcggtgcagcgcgcgccttattaccctgaatcgcacaatttcaaggggctc
atttgtgaggcacgacttgattatcagtctgctgctgcatcttacaggctggcacgactt
gccatcaagagcttttctacaacacttccagaatctagtgttagagatgtaacgatcaat
ttggcaagatcacttcttaaggctggggatgctctcgaggcagcgcaggagtgtgaagct
ttgaagactcaaggtactcttgatgcggaatgtcttcaactatatgctctctctctttgg
cagcttgggaacaatgaacttgctctttctgtgacaagaaacctcgctgggagtatttct
agcatggaaaaggcaactgcaacggccattgctggtttcatttgcagattgttatatttt
atttctggaatggattcagcaatcaatagcattttaaaaatgccaaaggaattgtttcgg
agtcctaaagttagctttattttgtctggcatccacgctcttgataaaaataaccggctc
aatcagattgtttctgtcagtcgtcaatttcttagttctcttgaagaaatggaggcaatg
cacttcttaatagctcttggtaagctggtaaagaatgaatcagaacccggccttggttat
cagactggaattcatcatctgcagaaagctgtccacatgtatcctagtagtaatctgtta
aggcaattgcttggttatcttttgctatcgagtaaagaatggaatgattcacatctcgca
acaaggtgcagtgtcataagctccttcgaaattccccgaaaagaaggtttcaaatcttca
tttgaaatccttggtgctggagcagttgcttgctatgccatcggaaacagcaatccaaag
ttttccttcccaacatgcacataccagtgtttgcaggagcctcaagccattcagcaactg
caaaaatgcttacgtcaggaaccttggaatcatagtgctcagtacttgctcatacttaat
cttctacaaaaggcgcgagaggagagatttcctcaacatctttctggtatactgaatcgg
ctgattcgcgtggctctgtcaaatgaattatatgccaggacgagtacctgctatccatat
agaaaattccagctcttactttctgcttctgagtcatgctttcaagagggaaggcaagtg
gagtgtatcactcatgcgacaaatgcatctaggcttccgcttcctaatggctatcttttc
ttcgcgcacttgatattgtctcgtgcatatgctgttgctggggacctgaaaagctctcat
aaagaatatgagagatgcttagaccttgggacaaattttcatattggttgggtgtgtctt
aaattcatggaggtacattatgagatgcaaattgattcaagcaaaatagactcaaggttc
tatgaatgcttaaaggagaggggacactcaaatgtaatgtggggagctatcttctatctg
gcacggggtttaatttctttatggaaccatgattttctctctgcagaagactttcttgaa
cgagcttgttcattgatggattctgatagtgggatctctctctgctttggtgtcgcatgt
gtggaattagccaagctagggtatggttctcagttcctctcgctggctctgagacatctt
gccaaagcacaggagacggctttagttccattacctgtcgtatcaacattgcgggctcaa
gcagaaggaagtcttggttccaaagagaagtgggagagcaatctctgccttgaatggttt
acttggccaccagaaatgaggcccgcagagctcttctttcagatgttcctgctcgcaaaa
gatgttcaatctgcacgtgactctacatcctctatggtggcttgccaaagtccacaaaag
tgggtttgtcgagcaatccacacaaacccatcttgcttaagatattggaaggtgttgcaa
aggctcgtggagacagatcgaactctcatcagcacctaa
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