Rhodamnia argentea (silver malletwood): 115730221
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Entry
115730221 CDS
T10595
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115730221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115730221
03012 Translation factors [BR:
rarg03012
]
115730221
Enzymes [BR:
rarg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115730221
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115730221
Translation factors [BR:
rarg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115730221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
Helicase_C
OB_NTP_bind
DEAD
HA2_C
HA2_N
Ank_5
Ank_2
ATPase
AAA_22
nSTAND3
AAA_16
ResIII
AAA_19
AAA_7
Motif
Other DBs
NCBI-GeneID:
115730221
NCBI-ProteinID:
XP_030516693
UniProt:
A0A8B8N2R7
LinkDB
All DBs
Position
10:16420108..16451225
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AA seq
1457 aa
AA seq
DB search
MLSRLAPSGPAKPRHHQKFHTSFSSSSLWQRLVGDGASVPGDSVRSPSRPAASCVVRRFA
FRQRGSRDGEEMGKKRERKGERQQRHQHQPKNKPNRKVAELTRISIAERLEQFRASTQQV
LTFDEDLSNHERAVVHEVCRKMGMISKSSGRGNQRRVSVYKSKSKGENSEEKGSMSYLTL
SQESKEILNDLFIRYPPGEGVTSDQIAVKRTEKSERRKERQRDDIFCRPPMDKADITKKV
ESLSARLEKAANLKQITEDRSKLPIASFRDVITSSVEGHQVVLISGETGCGKTTQVPQFL
LDSMWAKGEACKIVCTQPRRISATSVAERISSERGENVGDDIGYKIRLESKGGKHSSIVF
CTNGVLLRVLVSGGAGGSNGEASNRHLKHYLSDITHIIVDEIHERDRFSDFILAILRDML
PLYPHLRLILMSATLDAERFSNYFGGCPIIRVPGFTYPVKIFYLEDVLTLLKSVQDNHLD
STTFSVPDENQMLTEEDKVALDDAINLAWSSDDLDPLLDLVSSEGTPQIYNYQHSLTGMT
PLMVFAGKGRAGDVCMLLSFGADCHLKAKDGATALDWAERENQQEAAQLIRKQMESISSN
SVDEQLLLDKYLSAVNPELIDEVLIEQLLKKICTDSKNGAILVFLPGWDDINRAKSRLLM
SPFFKDTSKFVILPLHSMLPSMEQKKVFKRPPGGCRKIILSTNIAETAVTIDDVVYVIDS
GRMKEKSYDPYNNMSTLQSSWISKASAKQREGRAGRCQPGTCYHLYSKLRAASLPDFQVP
EIRRMPIEELCLQVKLLNPNGNLQDFFLKTLDPPVSETIRNAVNILKDIGALSLDEKLTD
LGEKLGSLPVHPLTSKMLLFAILMNCLDPALTLACASDYRDPFTLPMLPNEKKKSAAAKA
ELASLHNGQSDQLAVVAAFECWKKAKDKGQEARFCSQFFVSSSTMRMLSSMRKQLQMELK
RNGFIPEDVSSCSLNAHDPGIIHAVLVAGLYPMIGRLVPRHRSGKRFVETANGDRARLHP
HSINYKLSFLKTDDQPLFMYDEITRGDGGTLIRNCTVVGPLPVLLLGTEIAVAPGNSDDD
DDDGDDGESDYDEDSDEDPTKNNDKSQGGDGEQTMSSPDAPVTVVVDRWLPFSSTALDIA
RIYCLREQLSAAILFKVIHPHEVLPPVLGAYVYATACILSYDGLSGILSPTGPADSLMSM
VNADESDELMPERRKPGEFLRFLMRPDRHHNSTYGYWEAGISMSTEKQNYNDLSIQNIQQ
PFSPASPTVQVKPPCEVSTSVGYGPRGQKPGLAASREKQKCSDLPIQNIQQPFSQATTSA
QGKPPSEVCTVVRHGPRGPKAGFSGSWKKRNTNGLSIQNIQRPFSSASTGGHKKPPSKVS
ASVGQGSRGPKAGVSELKKPKNNGMSSQNSPQPSVSMSGHPKPPAKVSTLVGYGSYMYGP
YGPRGDSLKRQRGNGSG
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atgctctctcgccttgccccctcaggtcccgcaaagccccgacaccaccaaaaatttcac
acttccttctcctcctcctccttgtggcagcgactcgtcggagacggagcttctgtaccc
ggcgattccgttcgatctccttcgcgtccagccgcctcctgcgtcgtacggcgattcgcg
ttccggcagcggggaagcagagacggggaggagatggggaagaagagagagagaaaagga
gagcggcagcagcggcatcagcatcagccgaagaacaagcccaatcggaaggtggctgag
ttgacgcggattagtatagccgagaggctcgagcagtttcgtgcgtccacgcagcaagtg
ttaacatttgatgaggacctgtcaaatcatgaacgagctgtagtgcatgaagtctgcagg
aagatgggaatgatatctaaaagctctgggcgtggcaatcaaaggcgtgtttctgtttac
aagtctaaatcgaagggggaaaactcagaagagaaggggagtatgtcttatttgacatta
tctcaggagtctaaggagattttgaatgatctgttcataagataccccccgggtgaggga
gtgactagtgaccaaattgctgtaaaacgtacggaaaaaagcgaacgaagaaaggaaaga
cagagagatgacatattttgcaggcctcccatggataaggcagatattacaaagaaggtg
gaatcactttctgctagattagagaaggctgcaaacttgaagcagattactgaagacaga
tctaagcttccaattgcatccttcagggatgtcatcacgtcatctgtagagggtcatcag
gtagttcttatatctggtgagacgggatgtggaaagaccacacaggtccctcagtttctt
cttgactcaatgtgggctaagggtgaggcgtgtaagatagtttgtacccaacctcggcga
atctctgcaacatcagtggctgagagaatatcttctgaaagaggagaaaatgttggagat
gatatcggatacaagatacggctggaaagtaagggagggaagcactcgtcgattgttttt
tgcaccaacggagtcttactgagggtgttagtttcgggaggagctggtggatcaaatggt
gaagcctccaataggcacttgaagcattatttatccgacataactcacatcattgtggat
gaaattcatgaaagggatcgcttctcggatttcatattggcaattctaagagacatgctt
ccattgtacccacacctgcgtctgatactaatgagtgccactctcgatgctgaacgattc
tccaactattttggtggctgcccaattattcgtgttccgggtttcacttatcctgtcaag
attttctacttggaggatgtgcttactctgcttaaatcagtacaagataatcacctggat
tccactacattcagtgttcctgatgaaaaccaaatgctgacagaggaagataaggtcgct
ttagatgatgctattaatttggcatggtccagcgatgacttggacccactacttgatttg
gtttcctcagaaggaactccacaaatttataattaccagcattccttaactgggatgaca
cctctcatggtgtttgctggtaagggcagggcaggtgatgtttgcatgctgctctctttt
ggtgcagactgccacttaaaagcgaaggatggtgcaactgcactggattgggctgaacgt
gaaaaccaacaagaagctgctcagttgattagaaagcaaatggagagtatctcttcaaat
tcagtggatgaacaactgttgcttgataaatatctttccgcagttaatcctgaactaata
gatgaagttcttatagagcagttattgaagaaaatatgtactgattcaaaaaatggagca
attcttgtttttcttccaggatgggatgatattaatagagcaaagagtagattacttatg
tcccccttcttcaaagatacttctaaatttgtgattttacctcttcactccatgctccca
tctatggaacagaaaaaggttttcaaacgcccacccggtggttgccgaaaaatcatcttg
tcaactaatattgctgagactgctgtcaccatagatgatgttgtttatgtcattgatagt
ggtcgaatgaaagagaaaagctatgatccttataacaacatgtcaactctccagtcttca
tggatttcgaaagccagcgcaaagcaacgagagggtcgggcaggccgttgtcaacctggt
acatgttatcatctttattcgaaattacgagcagcttctttgcctgatttccaagtacct
gagatcagaagaatgccaattgaggaactttgtctccaggtgaagttgcttaatccaaat
ggcaaccttcaggactttttcctgaagacattggatcctccggtttctgaaaccatacgg
aatgcagtcaatatactcaaggatattggtgctttgtctcttgatgaaaaattgacggac
cttggggagaagcttggttctctgcctgttcatccactgacaagcaagatgcttctcttt
gccatattgatgaactgccttgacccagcattgactcttgcatgtgcttcggactacagg
gacccattcaccctgccaatgttaccaaatgaaaagaaaaagtcagcagcagctaaagct
gagctggcttcattgcacaatgggcagagtgatcaactagcagttgtagcagcatttgag
tgctggaagaaagctaaggacaagggtcaagaagcacgcttttgttctcagttctttgta
tcctctagcactatgagaatgttgtcaagcatgcggaaacagctccaaatggaactgaaa
cgcaatgggttcattcctgaggatgtttctagttgtagcttgaatgcgcatgatccaggt
ataattcatgctgttctggttgccggtttatatccaatgattgggagattagtgccgcgt
catagaagtggaaaacgttttgtggagactgctaatggtgatagagctcgtctacatcct
cattcgattaactacaaattgtcattcttgaaaactgatgatcagcccttattcatgtat
gatgagataacacgtggggatgggggtactcttataagaaactgcactgtggtggggcca
cttccagttttgttgctaggtactgagattgctgtggctcctggcaactctgatgatgac
gacgacgacggtgatgatggtgaaagtgactatgatgaagacagtgatgaggacccaaca
aaaaataacgacaagtcacaaggaggagatggagaacagaccatgtcctcccccgatgca
ccagtaacagtagttgtcgatcgatggcttccctttagttctactgcacttgatatcgca
cggatatactgcttgagagagcaactatctgcggcaatcctattcaaagtcattcatcca
catgaggttcttcctccagtccttggggcttatgtgtatgcaacagcgtgcatcctatct
tatgatggtttatcagggatcttgtcccccacaggacctgctgactcattgatgtcaatg
gtgaatgcagatgagagtgatgaactcatgccagagaggaggaagcctggtgagttcctt
agattcctgatgaggcctgacagacatcataactcaacatatggatactgggaagctggg
atatctatgtccacagaaaagcagaactataatgacttgtcaattcaaaatattcagcag
ccgttttctccagcttccccgactgtgcaagtgaaacctccatgtgaagtttctacttca
gttggctatggtccaagaggtcagaaacctgggttagctgcatccagggaaaagcagaaa
tgcagtgacttgccaattcaaaatattcagcagccattttctcaagctaccacgagtgcg
caaggaaaacctccatctgaagtttgtactgtagtgcgccatggtccaagaggtccgaaa
gctgggttttctggatcctggaaaaagcggaatactaatggcttgtcaattcaaaatatc
caacgaccattttcttcagcttctacaggtgggcataagaaacctccatctaaggtttct
gcttcagttgggcaaggttcgagaggtccaaaagctggggtatctgaattgaagaagcca
aaaaataatggcatgtcaagtcaaaatagcccacagccttcagtttctatgagtgggcat
cctaaacctccagctaaggtttctactttagttggttatggctcatatatgtatggacct
tatggtccaaggggagattctcttaagaggcagcgtggtaatggctctggttaa
DBGET
integrated database retrieval system
