Rhodamnia argentea (silver malletwood): 115734173
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Entry
115734173 CDS
T10595
Name
(RefSeq) exosome complex component CSL4 isoform X3
KO
K07573
exosome complex component CSL4
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115734173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115734173
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
115734173
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
115734173
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GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
115734173
NCBI-ProteinID:
XP_030520651
UniProt:
A0A8B8NDW5
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Position
6:20232207..20244591
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AA seq
200 aa
AA seq
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MGETVVEESEELATPGDVLGRAAEVKPGRGAYLASHNNLVYASLTGRVRTVAPPPGSPDK
RPTVEVIGHKAHGAVPEPGSVVIARVTKVLSRMASADILCVGPKSVREKFTGIIRQQDVR
ATEIDKVDMHSSFLPGDIVRAIVLSLGDARAYYLSTAKNELGVVSAESTAGATMVPVSWT
EMQCPLTGQNEKRKVAKVGS
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacagtggtcgaggagtcggaggagttggcgacaccaggagacgttctggga
agagcggcggaagtcaaaccgggacgaggcgcctacctggcgtcccataataacctcgtc
tacgcctccctaactggacgcgtccgcactgtagctcccccacccggttcgcccgacaag
aggccgaccgtggaagtgattggccacaaagcccatggtgcagttccagagccaggttct
gttgttattgcacgagtgactaaagtgttgagtaggatggcatcagctgacatactttgt
gttggtccaaagtccgtcagggaaaagttcacaggaataattcggcaacaagatgttaga
gcgactgagattgacaaagtggatatgcactcatcttttctgccaggtgacattgtcaga
gctattgtcctgtcccttggagatgcacgagcttattatttgtcaactgcgaagaatgaa
cttggtgttgtatcggcagagagtacagcaggtgcaacaatggtcccggtaagctggaca
gaaatgcagtgtcctttaactggtcaaaacgagaaaagaaaggtcgcaaaagtcggcagc
tga
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