Rhodamnia argentea (silver malletwood): 115734977
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Entry
115734977 CDS
T10595
Name
(RefSeq) cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115734977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115734977
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
115734977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
WD40_Gbeta
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_NWD2_C
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Cytochrom_D1
Beta-prop_WDR41
Beta-prop_NOL10_N
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_VPS8
TPM_phosphatase
Motif
Other DBs
NCBI-GeneID:
115734977
NCBI-ProteinID:
XP_030521876
UniProt:
A0A8B8NHC1
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Position
7:complement(22907393..22912865)
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AA seq
438 aa
AA seq
DB search
MESNSSLEQTLQDGRIYRQLNSLIVAHLRDNNFTQAASAVASATMTPLNVEAPGNRLLEL
VAKGLAVEKGELLRGVSHGGTNDLGGSIPASHGLVPAPWTAVDFSSLRDTKGTSKSFTKH
ETRHLSDHKNVARCARFSTDGRFFATGSADTSIKLFEVSKIKQMMLPDSTDGAIRAVIRT
FYDHTHPVNDLDFHPQSTVLISAAKDNTVKFFDYSKSTAKRAFRVIQDTHNVRSVAFHPS
GDFLLAGTDHPIPHLYDVNTFQCYLSASVPEFAVNAAINQVRYSSSGGMYVTASKDGAIR
FWDGVSANCIRSIAGAHGKAEVTSANFTKDQRYVLSCGKDSTVKLWEVGTGRLVQQYLGA
THMQLRCQAVFNNTEEFVLSTDEPSNEIVVWDAMTAEKVARWPSNHNGPPRWIEHSPIEA
AFVSCGTDRSVRFWKETL
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcaacagcagtttggagcagacactgcaagatgggagaatatacaggcagctc
aattcgctcattgttgctcatcttcgtgacaacaatttcactcaggcagcaagtgcggtt
gcttcggcaacgatgacacccttgaatgttgaagccccaggaaataggcttcttgagctg
gttgccaagggtcttgcagtggaaaagggtgaactattgagaggtgtttctcatggtggg
acaaatgatctgggtggatcaatacctgcttcacatggcttggttccagctccttggacc
gctgttgatttcagttctctgcgagacacaaagggcacgtcaaagagtttcactaaacat
gagaccaggcatctttcggaccacaagaatgttgccagatgtgcaaggtttagcactgat
ggaaggttttttgcaacaggaagtgcggacacttcaattaagctctttgaggtctcaaaa
ataaagcaaatgatgctaccagattctacagatggcgctatacgagctgttatacggaca
ttttatgaccatacacatcctgtaaatgacttggattttcatcctcaaagtactgttctg
atatctgcagctaaagacaatacagtaaagttctttgattattcaaaatctacagcaaag
agagcattcagagttattcaggatactcacaatgtacgttcggtagctttccatccttct
ggagattttcttttagctgggactgatcatccaattccacacttgtatgatgtcaataca
ttccaatgctatctttctgcaagtgtcccagaatttgcagttaatgcagcgataaaccag
gtaagatattcatctagtggtggcatgtatgttacagcatctaaagacggtgctatacga
ttttgggatggggtatcggcaaactgtattcgctccattgcgggtgcacatgggaaagct
gaagtaactagtgccaacttcacgaaggatcagagatatgtactctcttgtgggaaagac
tctactgtgaaactctgggaagttggcactggaagattggtccaacagtatcttggagcc
actcacatgcagttgcgatgccaggctgtcttcaacaatacagaagaatttgttctatcc
accgatgaaccgagcaacgagatagtggtctgggatgccatgacagcagaaaaagtggca
agatggccatccaaccataatggccctcctcgttggatcgagcactcgcccatagaagca
gcttttgtatcctgcggaactgacagatcggtccgattctggaaggagactctgtag
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