Rhodamnia argentea (silver malletwood): 115735013
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Entry
115735013 CDS
T10595
Name
(RefSeq) polyadenylate-binding protein 7
KO
K13126
polyadenylate-binding protein
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03015
mRNA surveillance pathway
rarg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115735013
09123 Folding, sorting and degradation
03018 RNA degradation
115735013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115735013
03041 Spliceosome [BR:
rarg03041
]
115735013
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115735013
mRNA cycle factors
Stress granule specific factors
115735013
Spliceosome [BR:
rarg03041
]
Complex C
Other components
Complex C specific factors
115735013
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RBD_DEAH11
RRM_MUD2_C
RRM_ACIN1
RRM_3
RRM_RdRP1_2
RRM_occluded
Nup35_RRM_2
RRM_Nup35
HOATZ-like
Motif
Other DBs
NCBI-GeneID:
115735013
NCBI-ProteinID:
XP_030521913
UniProt:
A0A8B8NIH3
LinkDB
All DBs
Position
10:complement(21755940..21761634)
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AA seq
635 aa
AA seq
DB search
MAVPATVATAAAPASLYVGDLHPDVSDGLLFEAFTEFKSLTSVRVCRDSSSGRSLCYGYV
NFVSPVDATRAIETKNHTLLHGKVIRVAWSCRDPDARKNGKANVFVKNLADSVDNVGLKD
MFKKFGDILSCKVAMSDDGKSRGHGFVQFDSEESANAAIENLNGSNVEGKKIYVAKFVRK
SDRGLLTADAKYTNLYVKNLDPEVTEEGLQEKFSEFGKVTSMVIAKNDDGTSRGFGFVNF
ENPDDAKKATETLDGTQLGSKVLYVARAQKRSERNEILRRQFEERRKERILKYKDSNIYI
KNIDDDVTDEQLREHFSQCGMIISAKVMRDDKGISKGFGFVCFSTPEEANKAVNSFYGCM
FHGKPLYLAIAQRKDERQAHLQIQYTHQMPGLAGASTAVIPAGYPPFYYTAPSSLISQGP
SRPGLMYQPIGLRPGWRSPGFPHPARPGFQPSSFPVIPSTPRENRNNRGRMNGGIAQSAP
HMPPLQQSTQYVASAKDSNNNQRGRNARYVPNGHSRETNNGAGVTSSVPDSAGSGQQGTE
MLSSMLSAASPEQQKQILGERLYPLVQKHKPDLVAKITGMLLEMDNSELLLLLESPESLT
AKVEEAVDVLKLSKTKSSSQDSLHPSFLSAQVAVS
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggcggttccagcgacggtcgccaccgccgccgctccggcgtcgctctacgtcggcgac
ctccacccggacgtctccgacggcctcctcttcgaggcgttcaccgagttcaagagcctc
acgtccgtccgcgtctgcagggactcgtcctctggcaggtcgctctgttacggatacgtc
aacttcgtctcccccgtcgatgcaacacgtgctattgagaccaagaaccacactttgctg
catgggaaagttataagggttgcctggtcatgtcgcgatcccgatgcaaggaaaaatgga
aaagcaaatgtatttgtaaagaacttggctgattcagttgacaatgttggactgaaagat
atgtttaagaaatttggcgatatcttgtcttgcaaagtagcaatgtctgatgatgggaag
agtagagggcatggctttgtgcaatttgatagtgaggaatctgcaaatgctgctatagaa
aatctaaatggctcgaatgtcgaaggcaagaagatctatgtggcaaaatttgtcaggaag
agtgatcgtggtctgctaactgctgatgcaaaatatacaaatctgtatgtgaagaatctt
gatccagaggtcacagaagagggtttgcaggagaaattttctgagtttggtaaagtcact
agtatggtcattgcaaagaatgatgatggaacctcaagaggttttggcttcgtgaatttt
gaaaacccagacgatgccaaaaaagctacagagactctggatggaacacagcttggctcg
aaagttctgtacgtagccagggcacagaaaaggtctgaacgcaatgagatactacgtcgg
cagtttgaggagagacgcaaagaacgaattctcaagtacaaggattcaaatatctatatc
aagaatattgatgatgatgtcactgatgagcaacttcgagaacacttcagtcagtgtggc
atgattatctctgcaaaagtgatgcgagatgacaaaggaataagcaagggctttgggttt
gtttgcttctccactccagaggaggccaataaagctgtaaatagtttttatggttgcatg
tttcatggaaagccattatatttggctattgctcaaaggaaagatgaaaggcaagcacat
ctgcagattcagtatacgcatcaaatgcctggactagcaggagcttcaactgctgttatt
cctgctggatatcctcctttttactacacagctccctcaagtcttatttctcaaggacct
tcgcgcccgggtttgatgtatcagccgataggactaaggccaggctggaggagtcctgga
tttccccacccagctagaccaggctttcaaccttcttcttttccagttattccgagcact
ccaagagagaacagaaacaacagaggaaggatgaatggtggcattgctcagtctgcgcca
catatgccacccttgcagcagtcgactcaatatgtagcctctgcaaaagattcgaacaat
aatcagcgcggaaggaatgctagatatgtaccaaatggtcactctcgcgagacaaataat
ggagcaggggtcacctcttctgttcctgattctgctggatcgggtcaacaaggaaccgaa
atgctaagcagcatgctttctgctgcatcccctgagcagcagaaacagatactcggggaa
cgtctgtacccactagttcagaaacacaagcctgatcttgtcgcgaaaattactgggatg
cttttggagatggacaactcagagctgcttctgcttctggaatctcccgagtcgctcact
gccaaagtggaagaagctgtagatgttctgaagctctcaaaaaccaaatcctccagccag
gactccttacatcccagctttctgtccgcccaagttgcagtcagttga
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