Rhodamnia argentea (silver malletwood): 115735056
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Entry
115735056 CDS
T10595
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
rarg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115735056
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115735056
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
115735056
NCBI-ProteinID:
XP_030521957
UniProt:
A0A8B8NHK2
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Position
10:complement(21277155..21285071)
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AA seq
1040 aa
AA seq
DB search
MDGMRRSFDRSREFVPKKPRLTEELGTRPFALRPGAPVVNPPQPRFKLSDREVDGNDPAS
EAYQPQPLPQHQQHQELVEQYRTALAELTFNSKPIITNLTIIAGENLHAAKAIAATVCAN
IIEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDSSVHSAMRHLFGT
WKGVFHYQTLQYIERQLGFGSTGNGSLASTTSRSDSQSQRPAHSIHVNPKYLERQRLQQS
SGAKVNDVAGALASSSEDLDRLDGAPSVSGGHTWEDPPVKTQSIQRLHRDPLGEAVQDKN
IGVVYGNYDYGSDTSRSSALGAGRISGKISEQGLSKPWYGTGGSVAQSPSSQRNGFSGKH
GFSSYQPSKSTSIDSHLQPSHGITNRSGGISSSWKNSEEEEFMWDSVDPRSMERDMTNIP
SISRKDRWTLDGSEEMGSITNLAKPLSKDGLIHTGTSNNLGVSEGYPGRVGGLSSSMSSF
SRREVGSEMRSPNVKQIGSGFSPSAASSGITGSQRIQSLGPASPSGRSLAYQHSLSTSDT
RLTHQKLQNLPEQNYPXAQMLPRTEFKTAHLPEKSSVGPNNVHNPDSLSKFRLKELKLSP
PTIPLQTRHHRPQLQQARSEPAMPEILGQNKKPLLSQASEHDASAAPETSGQSSKSRLLA
ADIEGEAVSIDAAAIPPSLSAVDPRSMPSRVRTKPPSLTGPPPIDLVSSDLGASLSTLLA
SRHDDSSISRDASQVKVGLPSAPPGPPTVVDNAGDRSSSAVETTSNPVSSLLSTLVAKGL
ISTSKPESTSVSSQMHMKVQNKAKDNVAAGFGPDSSASVVPVSLTEDDVPIVEQVTKSST
PPLPHSPREIKNLIGFEFKPSVVREFSESVISELFEDFPHRCGICGVQLKFQEHLDQHLA
WHDSKDPESRGVLVPSRGWYPNLSDWVARKVYLPCESEHFGSEEKSGETTEMHGPMVPAD
ESQCACILCGELFDDVYSLERDEWMFKGAVHMDIPSASGTMISIKNQSSPQGPIVHASCI
SKSSLQDLGLANDVKLEKDA
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggatggcatgcgtagatcgttcgatcgatccagagaatttgttcccaagaagcctcgg
ttgacagaggagctgggcacgcgaccctttgcactgaggccgggggctccggtggtgaat
ccgccgcaaccgaggttcaaattgagcgatagagaagtggatggcaatgatccggccagt
gaagcttaccagccacagcccctgccgcagcatcagcagcaccaggagctcgtggagcag
tacagaacagcgctcgcggagctcactttcaattcgaaaccgataatcactaatctgacc
atcatagctggggagaatttgcacgctgccaaggcgattgcggccactgtgtgcgcaaac
attatcgaggttcccagtgaacaaaagcttccatcactttatcttttagacagcattgta
aagaatattgggagggactacattaagtatttcgctgcgaaactgcccgaggttttctgc
aaggcatataggcaagttgattcttcagtacattcagcaatgagacaccttttcggaacc
tggaaaggagtctttcattatcagactcttcaatacatagaaagacaacttggctttggc
tctacgggtaatggttcgttggcatctacaacatcgaggtctgattcgcagtctcaacgt
ccagcacatagtatacatgttaaccccaaatatctagagaggcagcggcttcagcagtca
agcggagcaaaggtaaatgatgtagctggtgctttggcaagctcatctgaggatttagat
aggctggatggagcacctagtgttagtggtggacatacatgggaggatcctccagtgaaa
acgcaaagcattcagcgtttacatagagatcctcttggtgaagcagttcaagacaagaac
ataggtgtagtttatggaaattatgactatggttctgatacgtcgagaagttcagcacta
ggagctggaagaatttctggtaagattagtgagcagggactcagcaagccttggtatgga
actggaggtagcgttgcccaatcaccatccagccaaagaaatggttttagtgggaagcat
gggttttcgagttaccagccctctaaatctactagcattgattctcatcttcagccatca
catggcatcacaaatagaagcggtgggatctctagtagctggaagaactctgaggaagaa
gagttcatgtgggattctgtggaccctagatctatggagcgcgatatgaccaacatccct
agtatctcaagaaaagatcgttggactcttgatggttcagaagaaatgggatcaataact
aaccttgcaaagccactttccaaggatgggcttatacacactggaacttcaaataatttg
ggtgtgtcagagggttaccctggtagagttggtggactgtcatcaagtatgagttccttt
tcaaggagggaagttggatcagagatgagatctcctaacgtcaaacaaataggctctggc
ttttctcctagtgcagcctcctcaggaatcacaggtagccaacgaatacagtctctaggg
cctgcatcaccttctggacggtcattagcataccagcattctctttctacttctgataca
cgccttacccatcaaaagttgcaaaatttgccggagcaaaactatccgtgagcccaaatg
ctgcctcgcaccgagtttaagacagctcatctgccagaaaagtcaagtgtagggccaaat
aacgtacataatccggattccttgtctaagtttcgcctcaaggaattgaagctttctcct
cctacaattcctcttcaaacaaggcaccatcgtcctcaattgcagcaggcacgatctgaa
cctgcaatgccagagatattaggtcagaacaagaagccacttctctcccaagcttctgaa
catgatgcttctgctgccccagagacgtcaggacaatcgagtaagagtcgtttattggct
gccgatattgaaggtgaagctgtctctattgatgctgctgctatcccaccaagcctgagt
gctgtggacccaaggtctatgccgtcacgagtacgtaccaagcctccatcattgactggg
cctccccctatcgacttggtctcctctgatttgggtgcttcattgtcaactctcctagca
tctcgtcatgatgactcatcgatttcaagagatgcatctcaagtgaaggtgggactgcca
tcagcgccaccaggtcctccaactgttgttgataatgcaggtgacaggagttctagtgca
gtagaaacaacctcaaatccagtgtcgagtctcttgagcacattagttgcaaagggtctg
atatcgacatcgaagccggagtcaacttccgtgtcttcccaaatgcatatgaaagtgcag
aacaaggccaaagacaatgtcgctgctggatttggcccagattcttcagcctcggttgtg
ccggtatccttgactgaagatgatgtgcccattgtggagcaagttacaaagagctctact
ccccccttgcctcattcgcctagagaaataaagaacctcataggttttgagtttaagcca
tctgtagttcgagagttcagtgaatctgtgatcagtgaactcttcgaggacttcccccac
aggtgcggcatatgtggggtgcaattaaaatttcaagagcacctggatcaacacttggct
tggcatgattcaaaagatcctgaatcaagaggtgtgcttgttccatcaaggggatggtat
ccaaacttatctgattgggtagctcggaaagtataccttccatgtgaatctgaacatttt
ggttcagaagaaaagagtggcgagacgactgagatgcatggaccgatggttcctgcagat
gaatctcagtgtgcttgcatcttatgtggtgagctttttgatgatgtttatagccttgaa
agggatgagtggatgttcaagggagcagtccacatggatatcccttctgcgagtggtact
atgatcagcataaaaaaccaaagttctcctcagggtcccattgtccacgcatcttgcata
tcaaaaagttcactacaggacctgggattggccaatgatgtaaaactggagaaggatgca
taa
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