Rhodamnia argentea (silver malletwood): 115735824
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Entry
115735824 CDS
T10595
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03015
mRNA surveillance pathway
rarg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115735824
09123 Folding, sorting and degradation
03018 RNA degradation
115735824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115735824
03041 Spliceosome [BR:
rarg03041
]
115735824
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115735824
mRNA cycle factors
Stress granule specific factors
115735824
Spliceosome [BR:
rarg03041
]
Complex C
Other components
Complex C specific factors
115735824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_Nup35
RRM_7
YflT
RRM_MARF1
GH97_C
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
115735824
NCBI-ProteinID:
XP_030523106
UniProt:
A0A8B8NKT0
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All DBs
Position
11:19951500..19956308
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AA seq
645 aa
AA seq
DB search
MAQVQAQPQNAMPGVNAGPNQYATTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDL
TTRRSLGYGYVNYSNPIDAARALEMLNFTPLNDKPIRIMYSQRDPSVRKSGAGNIFIKNL
DKGIDQKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQYDNEEAAQKAIEKLNGMLLND
KQVYVGPFLRKQERESAKDRTKFNNVYVKNLAESTTEDELKTVFGEFGPITSVVVMRDMD
GKSKCFGFVNFENADDAARSVEALNGKKFDDKEWYVGKAQKKSEREVELKLRFEQSMKEA
ADKLQGANLYIKNLDDTIDDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEA
SRALSEMLGKMVVSKPLYVAHAQRKEDRRARLQAQFSQMRPVAMAPTIAPRMPFYPPGGP
GIGQQLFYGQAPPAVMPPQPGFGYQQQLVPGMRPGAAPMPNFLVPMVQQGQQGQRPGGRR
AGVVQQSQQPVPMMQQQMLPRGRVYRYPPGRGLPDMSVPGVAGGMIPMPYDMGGMPLRDT
PISQTVPITALASALANASPDQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLH
LLESPEALKAKVAEAMEVLRSVAQQQAGGPADQLASLSLNDNLVS
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggttcaggctcagcctcagaatgcgatgccgggagtgaacgcggggccgaac
cagtacgcgacgacgtcgctctacgtcggggatctggacttcaatgtcactgattcccag
ctttacgatctgttcaaccaggtcggccaggtggtgtctgttcgtgtctgcagggacttg
accacgcggcgatcgctgggctatggttatgtcaattacagcaacccaatcgatgctgct
cgggctttggagatgctgaactttactcctcttaatgacaagccaattcggataatgtat
tctcagcgcgatcctagcgtccgtaaaagtggagctggaaatatattcatcaagaatttg
gacaagggaattgaccagaaagcattgcatgatacattttctgcttttgggaatatcctc
tcttgcaaagttgctacagattcttctggtcagtcaaaaggctatggctttgtacaatat
gataatgaggaagctgctcagaaagctatagagaagctgaatggcatgctattgaatgac
aagcaagtgtatgtgggacccttccttcgcaagcaggaaagagaaagtgctaaagatagg
acaaaatttaacaatgtgtatgtgaaaaacctagcagagtcgacaactgaagatgagctg
aaaacagtttttggagaatttggaccaattactagtgttgtggtgatgagggatatggat
ggtaaatccaaatgttttggatttgtgaactttgagaatgcagatgatgctgctagatca
gttgaggctctgaatgggaagaaatttgacgataaggaatggtatgttgggaaagctcaa
aagaaatctgaaagggaagttgagctgaaacttcgatttgagcagagcatgaaggaagca
gctgataaacttcaaggggcgaacttgtatataaagaatctagatgataccatagacgat
gacaagcttaaggagctgttctctccatttggtaccattacatcgtgcaaggttatgcga
gatcccaatggcattagtagaggatcgggatttgttgctttctctactcctgaagaggca
tcccgagctctctctgagatgctgggcaaaatggttgtcagcaagcctctgtatgttgca
catgcacaaagaaaagaagaccgaagagccaggttgcaggctcaattttctcaaatgagg
ccagttgcaatggcgccaactattgctcctcgcatgccattttatccacctggaggtcca
ggtattggccaacaactattctatggtcaagcccctcctgctgtgatgcctccccagcct
gggtttgggtatcaacagcagcttgttcctggtatgagacctggtgcagctcccatgcca
aatttcctggtgcctatggttcagcaggggcagcaaggtcagcgacctggtggaagacgt
gcaggagttgttcagcaatcacagcagccagtcccaatgatgcaacaacagatgcttccg
aggggacgtgtttatcgataccctcctggacgtgggttgcctgacatgtcagtgccgggt
gtggctggaggaatgatacctatgccgtatgacatgggtggaatgccattacgtgataca
ccaatctctcagactgttccaattacagctctggcttctgccctagcaaacgctagtcca
gatcagcagagaacgatgttaggcgagaatctttatccgctggtggagcagctggagcct
gatgcagcagccaaagtcactggcatgcttctggaaatggatcagactgaggtcttgcat
ttgctggagtctccagaagccctgaaggcaaaagtggctgaagcaatggaggtccttagg
agtgttgcgcagcaacaggctggtggccccgccgatcagctggcatctctttctttgaat
gacaacctcgtctcctga
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