Rhodamnia argentea (silver malletwood): 115736035
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Entry
115736035 CDS
T10595
Name
(RefSeq) transcription initiation factor TFIID subunit 4b-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115736035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rarg03021
]
115736035
03036 Chromosome and associated proteins [BR:
rarg03036
]
115736035
Transcription machinery [BR:
rarg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115736035
Coactivators
SAGA/TFTC/STAGA complex
115736035
Chromosome and associated proteins [BR:
rarg03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
115736035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
Motif
Other DBs
NCBI-GeneID:
115736035
NCBI-ProteinID:
XP_048133430
UniProt:
A0ABM3HA16
LinkDB
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Position
4:7277437..7286242
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AA seq
871 aa
AA seq
DB search
MDPSIMKLLEEDEDESMHSGADVEAFQAALNRDIGGVSQRDNHGPSQSYPGWQPENANSQ
IQHEPKNAEHQEQMLAQMQRQQGDSLADPQQNNTLEEVNNQHLKQKQVQDGHQLRQGEQI
SLQIKQSPGMPVSENNSLPMSEPGRVHTLDSESQYLKLQQMSNQQATVPGQAPNKPNRVK
QVPFALLLPVILPQLDKDRAMQLQTLYGKLKKNEIPKEGFVRIMRGIVGDQMLKLAVMKM
QTQPPPQLHIQGQTSALPQHPRMQPASTAKFNDSSPSGQVHSTIDRNGPKAGEVERIPDS
QFVQQQQHFQGMQTFPKYGSPGGYHPLSGTNMNSSASSVKTQPNDTQMKQIPIHQNLGSS
HPGGSTQAMSLSTAPKFDRQHPNNDNKRTQSGSLPPFASNISLQQNSVPWKPSTTKDQSS
GAFSSSAYVKHEPVDQSSDQQKQQLSSLQGLSSVSAGHLEQRIPISGTSRDNSFDPQSPG
VGLLTPTSAGTSHQDSISAAPAQDTNVQLGSRTASTPAGNNARTPSKKPSVGQKKPLETL
GSSPPPSSKKQKISGSFADQSIEQLIDVTAVSGVNLREEEEQLFSGTKEDSRVSEASRRV
VQEEEETLILQRAPLQKMLAEIMARCGVKNISNDVERCLSLSVEERLRGLLCNLIRVSKQ
RVDVERPRHRTIVTSDVGQHLMNMNRKAREEWEKKQAEAEKLRKQSECTSLQPDSNQGVD
GDKEKDENRGKSVKVNKEEDDKMRTTAANVAARAAVGGDDMLSKWQLMAEQARQKREGGL
EVASQVGKDSQKSSISGRSNKENQEAGKRGQAASGAIRKSGRNQAFASQPKVARTISVKD
VIAVLEREPQMSKSSLIYRLYDKVRSERSGE
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggatccttccataatgaagcttctggaagaagatgaggacgaaagcatgcactcaggg
gctgacgtggaggctttccaggctgctctcaatcgcgatattggaggtgtctctcaaaga
gacaaccatgggcccagccaatcatatccaggatggcagcctgaaaatgcaaattctcaa
attcaacacgaaccaaaaaatgcagaacatcaggaacagatgttggcacagatgcaacgg
cagcaaggtgactctcttgctgatccccaacaaaataatactttggaggaagtcaataat
cagcatttgaagcagaaacaagtgcaagatggtcatcaactaaggcagggagaacaaatt
tctcttcagattaaacaatctcctgggatgccagtgtcagaaaacaattccctccccatg
agtgagccaggtagagtgcatacgctagacagtgaatctcagtacttaaagttacagcaa
atgagcaatcaacaggcaacggtccctgggcaagcaccaaataaaccaaatcgtgttaaa
caagttccatttgcattattgctccctgtgattcttccccagcttgataaagatagagcc
atgcaactgcaaactctttatggcaaattgaagaaaaatgaaattcccaaggaaggattt
gtgagaatcatgagaggaattgttggagatcaaatgctgaagttggcagttatgaaaatg
caaacgcagcctcctccgcagttgcatatccaaggccaaacttcagctctaccgcagcac
cctagaatgcagcctgctagcactgcgaagtttaatgattcatctccatcaggccaagtc
cattccacaattgatagaaatggtccaaaggctggagaggtggaaaggataccagattct
caattcgtgcagcagcagcagcattttcagggcatgcagacttttcccaagtatggaagt
cctggtggttatcatccattgagtgggacaaatatgaatagttccgcttcatctgtcaaa
acacaacctaatgatacacaaatgaagcagattccaattcatcaaaatttgggttcaagt
catccgggaggatcaactcaggcaatgagcctgtcgactgcaccaaaatttgatcggcag
catcctaacaatgataacaagagaacgcaatctggttctctccctccatttgcaagcaat
atatcgctccagcaaaattcggttccttggaagccgtctactactaaagaccaaagttct
ggtgctttctcatcatcggcctatgtgaaacatgaacctgttgatcagtccagtgatcaa
caaaaacaacagttatcttcccttcaaggactgtcttctgtttcagctgggcatcttgag
caaagaattcccatatcaggaacatctagggacaattcttttgaccctcagtctccagga
gtgggtctcttgactcctacaagtgctgggacttcgcatcaggattctatttctgcagca
ccagctcaggatactaatgtccagctaggctcccgtacagcatcgacaccagcagggaat
aatgcaagaacgccttctaaaaaaccttctgttggccagaagaagccacttgagactctt
ggttcttcgccacctccctcaagtaagaagcaaaagatatctgggtcctttgcagatcaa
agcattgaacaactcattgatgtcactgctgttagtggggtcaatctcagggaagaagaa
gaacagctgttttctgggacaaaggaagacagtcgagtctcggaagcgtcccgaagagtt
gtccaagaggaagaagaaactctgatattgcagcgagcacccctgcagaaaatgttggca
gagatcatggcccgatgtggtgtgaagaatataagcaacgacgtggagcggtgtctgtct
ttgagtgtggaggaaaggctgcgtggactgctgtgcaacttaattagagtttcaaagcag
agggttgatgtcgagaggcccagacaccggaccattgtcacttcagatgtcggccagcac
cttatgaatatgaaccgcaaggctagggaagaatgggagaagaaacaggctgaagcagaa
aagctaaggaaacaaagtgagtgtacatcattgcagcctgatagcaatcaaggagttgat
ggtgataaagaaaaggatgaaaaccgtggaaaatccgtgaaggttaacaaagaggaagat
gacaagatgagaacaactgctgcaaatgttgctgcccgagctgctgtgggaggggatgac
atgttgtccaagtggcagcttatggctgaacaagcccgtcaaaaacgtgagggaggattg
gaagtggcatctcaggttggtaaagacagtcaaaaatcttcaatctctggaagaagcaat
aaggaaaatcaagaagcaggaaaaagggggcaagctgcatctggggccattagaaaatca
gggaggaaccaagcttttgcatcgcaaccaaaggtagctcgtaccatttctgtcaaggac
gttattgctgttctggaaagggaacctcagatgtcaaagtctagtctcatatatcgcctt
tatgataaagttcgttcggagagaagtggtgaataa
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