Rhodamnia argentea (silver malletwood): 115736269
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Entry
115736269 CDS
T10595
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03020
RNA polymerase
rarg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115736269
09124 Replication and repair
03420 Nucleotide excision repair
115736269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rarg03021
]
115736269
03400 DNA repair and recombination proteins [BR:
rarg03400
]
115736269
Enzymes [BR:
rarg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115736269
Transcription machinery [BR:
rarg03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
115736269
DNA repair and recombination proteins [BR:
rarg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
115736269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
115736269
NCBI-ProteinID:
XP_030523730
UniProt:
A0A8B8NMJ4
LinkDB
All DBs
Position
11:14286010..14294899
Genome browser
AA seq
1852 aa
AA seq
DB search
MDIRFPFSPAEVAKVRMVQFSILSPDEIRQMSVVQIEHGETTERGKLKIGGLSDPRLGTI
DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILVDEEDHK
FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDVQDQGSEEPVKKSRGGCGAQQPKLTI
EGMKMIAEYKAQRKKNDDQDQLPEPVERKQTLSAERVLSVLKRISDDDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRQQERNGAPAHIIS
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNVLMWWEDFDGKVPTPAILKPRPLWTGKQVFNLIIPKQIN
LLRNSAWHAESETGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISSAKDEVKRLIKDAQEKKL
EPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
LDSLKMKKSEFDRLFRYEIDDESWNPDYMLPENAEDLRSIGELKDVFDAEVQKLEADRYQ
LGTEIATTGDNTWPLPVNLKRLIWNAQKTFKIDLRRPSDIHPVEVVEAIDKLQERLKVVP
GEDALSVEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIEARFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVNKTKESAKSVQCALEYTTLRSVTQATEVWYDPDPTTTIIEEDVDFVKSYYEMPDEEI
APEKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLNCIFNDDNADKLILRIRIM
NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNKFNENDGFKP
ETEWMLDTEGVNLLAVMCHEGVDATRTTSNHLIEIIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY
LRGVTENIMLGQLAPIGTGDCALYLNDEMLKHAIELQLPSYMDGPDFGMTPARSPISGTP
YHEGMMSPSYLLSPNLRLSPTTDAQFSPYVGGMAFSPASSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYNPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTS
PSYSPTSPSYNPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
PQSAKYSPSSVYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPGSPSN
SGVNPDYSPSSPQYSPSAAYSPSAPGYSPSSTSQYTPSNKDDESKKDDGSSR
NT seq
5559 nt
NT seq
+upstream
nt +downstream
nt
atggatattcggttccctttctctccggcggaggtcgccaaggtccggatggtccagttc
agcatcctcagccccgacgaaatcaggcaaatgtctgtagtgcagattgagcacggtgag
acgacagagaggggcaagctgaagattggtgggctgagtgatcctcgtcttggcacgatt
gataggaaattgaagtgcgagacatgcacggcaaacatggccgagtgccctgggcacttt
gggcatctggagttggcgaagccgatgtttcatattgggttcctgaagaccgtgttgagt
atcatgcgctgtgtttgcttcaattgctccaaaatacttgtagacgaggaagaccacaag
ttcaaacaggcccttcgaataagaaatcctaagaataggcttaagaagatactagatgcg
tgtaaaaacaaatcaaaatgtgaaggtggagatgagattgatgtacaagatcaaggctca
gaagagccggtgaaaaagagtcgtgggggctgtggtgcccagcagccaaagcttaccatt
gaaggaatgaaaatgatagcagaatataaggcccagcggaagaaaaacgatgatcaggat
cagcttcctgaacctgtggaaaggaaacagacactttctgctgaaagggtgctcagcgtt
ctgaagagaataagtgatgacgactgccagctgttaggcttgaacccaaaatatgctcgt
ccagattggatgattttacaagttctacctattcctccacctccagtgaggccctctgtg
atgatggacacctcttccaggagtgaggatgatctgacgcatcaattggcaatgattata
agacataatgagaatctaaggcaacaggagaggaatggtgcaccagcacatatcatatcg
gagtttgcacagttgttgcaattccacattgctacatactttgacaatgagttgcccgga
cagccaagggctacccagcggtctgggagacctatcaagtcgatctgcagcaggcttaag
gcaaaggaaggtcggattagagggaatctcatgggaaaaagagtcgacttttctgctcga
acagtcattacacctgatccgacaattaatattgatgaactaggcgtcccttggagtatt
gccttgaatcttacgtatccagaaaccgtgactccttataacattgagaggttaaaggag
cttgttgaatatgggcctcatccgccacctggtaaaactggggctaaatatattataagg
gacgacggacagagacttgatctccgctatttgaaaaaaagtagcgatcatcatttggaa
ctaggctacaaggtggagcgacacttgaatgatggagactttgtgctgttcaatcgccag
cccagtcttcataaaatgtctataatgggtcacagaattaagatcatgccatactcgact
tttcgtctaaatttatctgtaacttcaccgtacaatgctgattttgatggagatgaaatg
aacatgcacgtgcctcagtcttttgaaacccgagcagaagttttggagctaatgatggtt
cccaagtgtattgtttcacctcaatccaatagaccagtgatgggaattgtccaggataca
ctcctaggttgtcgtaaaatcacaaagagggatacttttattgagaaggatgttttcatg
aacgtcttgatgtggtgggaggattttgatgggaaagttcccactcctgctattttgaag
cccaggcctctttggacgggaaagcaagtgttcaatctcatcattcccaagcagatcaat
ctcctgagaaattccgcatggcacgcagagtctgaaacaggatttataactccaggagat
acccaagttcgaattgagaagggggagttactttcgggtactctttgcaagaagacactt
gggacatctacaggaagtctcatacatgtcatctgggaagaggttggcccagatgcagcc
cggaaattcttgggacatacccagtggcttgtcaactattggcttttgcagaatggtttc
agcattggtattggagacaccatcgctgatgcagcaacaatggaaaaaattaatgagacc
atttcttcggctaaagatgaagtgaaaaggcttataaaagatgctcaggagaaaaagtta
gagcctgaacctggacgaacaatgatggaatcttttgaaaacaaagtgaatcaggtgttg
aacaaggctcgtgatgatgctggaagtagtgcccaaaagagtttatctgagagtaacaat
ctcaaagcaatggttactgctggatccaagggaagtttcatcaatatttctcagatgact
gcttgtgttggtcagcagaatgttgagggtaagcggatcccgtttggattcatagatcga
actctgccccatttcacaaaagatgattatgggccagaaagtcgtggatttgtcgagaac
tcgtatcttcgtgggttgactccacaggagttctttttccatgctatgggtggtagggaa
ggtctaattgatactgctgtcaagacttctgagacgggatatatccagaggcgattagtg
aaggctatggaggatattatggtcaaatatgatggaacagttaggaactcgttgggagat
gttatacagtttttgtatggtgaagatggtatggactccgtctggattgaatctcagaaa
ctggattctttgaaaatgaagaagtcagaatttgacagacttttcagatatgagatagat
gatgagagctggaaccctgattacatgttgcctgaaaatgctgaggatctgagatcgatt
ggagaattgaaagatgtctttgatgctgaagttcaaaaacttgaagctgatagataccag
cttggaacagagattgcaactacaggtgataatacttggccattacctgtcaacctcaag
aggcttatttggaatgcccagaagacttttaaaatcgacttaaggaggccttcggatatt
caccctgtggaggttgtagaggctattgataagcttcaagagaggcttaaggttgttcct
ggtgaggatgctttgagtgttgaagctcaaaagaatgcaactctctttttcaatatctta
cttcgtagcacatttgctagtaagagagtgttgaaggagtataggcttactcgtgaagct
tttgactgggtgattggtgagattgaagcgcgtttcttgcaatcattagtggctccgggg
gaaatgattggttgtgttgctgcacaatctattggtgagcctgccacccagatgactctc
aatacctttcactatgctggtgtgagtgcgaagaatgtcactcttggtgttcctagattg
agagaaatcattaacgttgccaaaaaaattaagacgccctccctttccgtctatctgaaa
cctgaggtgaacaagacaaaggaaagtgctaagagtgttcaatgtgccttggagtacact
actctccgcagtgtaactcaagccactgaagtatggtatgatccagaccctacgaccaca
ataattgaagaggatgttgatttcgtcaaatcttactatgaaatgccggatgaagagatc
gcccctgaaaagatttctccttggttgcttcgcatagagttgaatcgggaaatgatggtg
gataagaagcttagcatggccgatattgcggggaagatcaatctggaatttgatgacgat
ttgaactgcatattcaacgatgacaatgccgataagctcattcttcgcattcgtatcatg
aatgatgaagctccgaaaggggagcttactgatgaatctgcagaagatgatgtcttctta
aagaagattgagagcaacatgctcacagaaatggctcttcgagggatcccagatattaac
aaggtgtttatcaagaatggcaaagtaaacaaattcaatgagaatgatggcttcaagcca
gaaactgagtggatgttagatactgaaggtgtgaacctattagctgtcatgtgtcatgaa
ggagttgatgccacaaggacaacgagcaatcatctaatagaaatcattgaagttcttggt
attgaggcagttcgtcgctccttactagatgaactgcgtgttgtcatatcatttgatgga
tcttatgtgaactatcggcatttggctatattgtgtgataccatgacataccgaggccac
ttgatggccattacacgtcatggcatcaatcgaaatgacactgggccactgatgagatgc
tcatttgaagaaactgtggacattcttcttgatgctgctgtctatgccgaatcagattat
ctgaggggtgttacggagaacattatgttgggtcagcttgcacccattggcacaggagac
tgtgcattgtacctcaatgatgagatgttgaagcatgccatcgaacttcagctgcctagt
tatatggatggtcctgattttggcatgacacctgcacgttcaccaatctctggaactcct
taccatgagggtatgatgtctccaagttatttgctgagcccaaacctccgactctctcca
actacagatgctcagttttctccctatgttggtggtatggccttctcgcctgcttcatct
ccggggtatagcccttcttctcctggatacagtccctcatcaccgggatacagcccgact
tcacctggttacagccccacatcacctgggtacagccccacatctcctgggtacagcccc
acgtctccaacctacagtcccagttctcctggttatagcccaacaagtcctgcatattct
cctacaagcccttcatattcaccaacttctcccagctacagccccacttccccatcttat
agccctacatctccatcttatagccctacttctcccagctacaaccccacttcgccaagt
tacagccctacatcacctagttatagtccgacctctcccgtttatagccccacatcacct
gcgtatagccccacctcccctgcatacagccccacctcaccatcttatagcccaacatct
ccttcatacagcccaacgtcgccatcctataacccaacttcaccttcttacagtcctaca
tctccttcctacagcccaacttcgccagcttatagccccacatctcctggttacagccca
acatcaccaagttacagcccaacttcaccaagctacagccctacttctccaagttacaac
cctcagtcggccaaatacagcccatcatcggtgtactcaccaagcagtccaagattgtca
ccatccagtccttacagtcctacatctccaaactacagccccacatcgccatcatactca
ccaacatctccgtcatattctccatcaagcccaacatacagtcctggcagcccatccaat
tcaggtgttaacccagattacagcccaagttctcctcagtacagccccagtgctgcatat
tctccaagtgcacctggatactcgccttcttctaccagccagtacactccgagcaacaag
gatgacgagagcaagaaggatgacgggagcagtcggtga
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integrated database retrieval system
