Rhodamnia argentea (silver malletwood): 115736612
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Entry
115736612 CDS
T10595
Name
(RefSeq) zinc finger CCCH domain-containing protein 49
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115736612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rarg03041
]
115736612
Spliceosome [BR:
rarg03041
]
Complex B
Other components
Prp19-related factors
115736612
Complex C
115736612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
RRM_YTH1
zf-CCCH
RRM_3
RRM_occluded
zf-CCCH_4
zf-CCCH_10
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
115736612
NCBI-ProteinID:
XP_030524248
UniProt:
A0A8B8NQL8
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Position
8:8373365..8378076
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AA seq
498 aa
AA seq
DB search
MAHRLLRDAEADGWERSDFPIICESCLGDNPYVRMTRAQYDKECKICQRPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALSISSHDTIPKSDVNREYFAE
EHDRKARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS
EQDLKDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQAPKPETEGSEVARQQTAVAHSGLLPRAVISQQQSQMQGPGSQDHGPAMHYYNTLPPPQ
PERTFYPSMDPQRMGAIVPSQEGSSSGPSGSSENRPPSEQQQQGQHYAYPAMAPPHGQYY
SHYYPPYGYMMPPPPYQQYQLPNQSTVPPLHPPPATQQYQQHPVQSGSTPSSSAPVPPPA
PPSSSGSTPGGSAPPVSS
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacaggttgctgagggatgcggaggccgacggatgggaacgctccgatttcccc
atcatctgcgagtcctgcctcggcgacaacccttacgttcgcatgacaagggcacagtat
gataaggagtgcaaaatctgccagcgtccatttacagttttcaggtggagaccaggtcgc
gatgcaagatacaagaaaactgaaatttgccagacttgctgtaagttgaaaaatgtctgt
caagtctgccttttggatcttgaatatgggttgccagttcaggttcgagatactgcttta
tccatcagctcacatgacaccattcccaagagtgatgttaatagggagtactttgcagag
gagcacgatcggaaggctagggctggattagattatgaatcctcatatggcaaggttcgg
cctaatgatactattctgaaacttcaaagaacgacgccgtattacaaaagaaatcgagca
catgtttgcagcttctacatcaggggggagtgtaccagaggtgcggagtgtccatatagg
catgaaatgccagtaacgggggagttgtctcagcaaaatataaaagatcgttactatgga
gtaaatgatccagtggctctaaagctgctcaacaaagctggggagatgccctcattggag
ccccctgaggatgagagcatcagaaccttgtatgtgggtggcctggatgcaagggtatct
gagcaggatttgaaggacaatttctacgcccacggtgaaattgaatccataaggatggtg
ctacaacgagcatgtgcttttgtgacatatacaaccagggaaggtgcagaaaaagctgcg
gaggagctctcaaataaactggtgataaaagggttaaggctgaagctgatgtggggtaga
cctcaagccccaaaaccagaaactgaaggttcggaagttgcacggcaacagacagccgtc
gctcatagtgggctgctaccaagggctgttatatctcagcaacagagccaaatgcaaggg
cctggttctcaggaccatggcccagcaatgcactactacaacacgctaccgcctcctcag
ccagagagaaccttctatccctccatggacccccaaaggatgggtgcaattgttccttcc
caggaagggtcttccagtgggccctcagggtccagcgagaacagaccaccttcggagcag
cagcaacagggacagcattatgcttaccctgcaatggccccaccacatgggcaatattat
tcccattattacccaccttatggttatatgatgcccccgcctccttatcaacagtaccaa
ctgccgaaccaatcgacagtgcctccgctgcatccccctccggcaactcagcagtatcag
cagcatcctgtgcaatcaggatccacaccctcgagttctgcacccgttccaccgccggca
ccgccatcatcttcggggtctacacctgggggttctgctccaccagtgtcttcttag
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