Rhodamnia argentea (silver malletwood): 115736672
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Entry
115736672 CDS
T10595
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03018
RNA degradation
Brite
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115736672
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115736672
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GFIT
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NCBI-GeneID:
115736672
NCBI-ProteinID:
XP_030524351
UniProt:
A0A8B8NPC0
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Position
8:7696027..7702779
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AA seq
676 aa
AA seq
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MSGLINSSLNNSTANLPDGTGRSFATSFSGQSGAASPVFHHSGTIQGLHNMHGGFNVPNM
SGTIPSRSSTINNLPSGGVQQPAGNLSGGRFASNNLPVALSQLSHGSSHGHSGVANRGGL
NVVGNPGFSSNANGVGGSIPGILPTSATIGNRNAVPGLGVSPILGNASSRISSSIGNMVG
GGSIGKNLNAAGGVSMSGLASRLNLSSNAGSGNLGVQGQNRLLGGVLSQGSPQVFSMLGN
SYPSAANPLSQSHMQQVNNLSSMGMLNELNSSDSTPFDMNLDFPQLTSRPSSAGGPQGQI
GSLRKQNLSPIVQQNQEFSIQNEDFPALPGFKGGNSDYSMDLHQKEQLHDNAMSMMQSQH
FSMGRSAGFNLGGAYSSHRPQQQQQQPQSVSSVTGGGVSFSPGNSQDLLHLQGSDIFPSS
QTTYNSQGFQTSGPPPGVGLRPLNSPSTMSGMGSGMGSYDQLIQQYQQQQNQSQFRLQQM
SAVNQSFREQGMRPMQTSQSTPDPYGLLGLLSVIRTSDPDLASLALGIDLTTLGLNLNSS
EDLHKTFGSPWSDEPAKGDPEFSVPQCYYSKQPPILHQGYFAKFSVETLFYIFYSMPKDE
AQLYAANELYNRGWVYHKEHRVWFLRAPNMEPLVKTQLYERGSYHCFDPSSFEIIRKDNI
VLYSEMLEKRPALPQH
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttgataaattcttctcttaataactcaacagcaaatctcccagacggcact
ggacgatcttttgcgacatccttctctggtcagtctggtgctgcttcccctgtttttcat
catagcggaactattcaagggttgcataacatgcatgggggctttaatgttcccaatatg
tctggcacaattccatcaagaagctccacaataaataatctaccatcaggcggtgtccaa
caaccagctggaaatctttctggtggtcgatttgcatcaaataatcttcctgtcgcactt
tctcagctatctcatggaagttcccatggacattcaggagtcgcaaacagagggggtctc
aatgttgtaggaaaccccgggtttagtagtaatgcaaatggagttggagggtccatccct
ggtatcctgcctacgtctgcgacaattggaaatcggaatgccgttcccggattgggggtg
tccccaatcttgggaaatgcaagttctcgcatttcaagctctattggtaacatggttgga
ggtggcagtattgggaagaatttaaatgctgctggaggagtatccatgtctggtcttgct
tctcgtctaaatttgagttctaatgctggatctggaaatttgggtgtgcagggccagaat
agactattgggcggtgtactttcccagggatctcctcaggtgttttctatgttaggcaat
tcttatccttcagcagcaaatcctctttcacaaagtcatatgcaacaagtgaataatctt
agctctatggggatgttgaatgagttgaactcaagtgacagtaccccatttgacatgaac
ttagattttcctcagctgaccagtcgtcctagttctgctggagggcctcaagggcaaata
ggttctcttcggaaacaaaatcttagcccaattgttcaacagaatcaagaattcagcatc
cagaacgaggattttccagccttaccaggatttaaaggtggtaattcagattattctatg
gacttgcaccagaaggagcaacttcatgacaatgctatgtcgatgatgcaatcccagcat
ttctcgatgggaaggtccgctggatttaatttagggggagcatactcatctcatcggcct
cagcagcagcagcagcaaccgcaatctgtgtcctcagtcactggtggtggggtttccttt
tcaccagggaacagtcaggatcttctacacttgcaaggatcagacatatttccatcttct
caaacaacatataactctcagggtttccaaacaagtggacctcctcctggtgttgggctt
agacctctaaattcaccaagcactatgtctggaatgggttctggaatgggttcgtatgat
cagcttattcagcaatatcagcagcagcagaaccaatctcagtttcgcttgcagcagatg
tctgcagttaatcagtcatttagggagcaaggtatgagacctatgcaaacatcacaatcg
actcctgatccatatgggttgcttggcttgctaagtgttattaggacaagtgatcctgat
ctggcatctctcgcacttggcattgacttgactacactcgggctaaatttgaattcttct
gaggatcttcacaagacttttggttccccatggtccgacgagccagcaaagggtgaccca
gagtttagtgttcctcaatgttattattctaaacagccaccaattttacatcaaggttat
tttgcgaagttctctgtggagacattattttacatattttacagcatgcctaaagacgaa
gcccaattatatgctgcaaatgaactctacaacagaggttgggtttatcacaaagagcat
cgggtgtggtttttgagggcgcctaacatggaacccctcgtgaagacacaattgtacgag
agaggatcttatcactgtttcgatccgagcagttttgaaataattcgcaaggataatatc
gtgctttactccgagatgctggaaaagagaccggccctacctcagcactaa
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