Rhodamnia argentea (silver malletwood): 115737384
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Entry
115737384 CDS
T10595
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115737384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115737384
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115737384
mRNA degradation factors
5'-3' decay
Decapping complex
115737384
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
DUF2237
Motif
Other DBs
NCBI-GeneID:
115737384
NCBI-ProteinID:
XP_030525345
UniProt:
A0A8B8NS60
LinkDB
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Position
2:27294713..27300874
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AA seq
824 aa
AA seq
DB search
MDGFGSGENSRFQLTGSQDLNQLGDGSAGGTVFDASQYAFFGNDAVEEVELGGLEDEEED
LPPAGLEEEEFLYDKEEGEDLRSLSEIDDLASTFSKINKVVSGPRVAGVIGERGSRESSA
AAEWAEGEDNINWFHRNVVDSDSTLEGKRWSSQPYSSAHIIESKTLYRTSSYPEQQQQLQ
PHYSSEPILVPKSSYPSYPPGGVSQHASPNYHAGHLNVPHPAGGNQMALSAPNLPPFSNS
QVQLTTLHHGSQFAGNMPPGLPLGSRPPNQWANQMNLYPGEHAGRLNSGIQQQFPHQNGL
MPPQLMPQPQPQSQQHWLRRPMQPPFGHLSGMQSQLFNPHLSSSPPLMGKFDAMFDLADL
GEQRLKLAQKGRQDLRFSQPGFDFNGPKSGSGWPRFRSKYMSADEIENILRMQLAATHSN
DPYVDDYYHQACLAKKTVGAKLKHHFCPTHLRELPPRARTNTEQHAFLQVDALGRISFSS
IRRPRPLLEVDSPNSSGAAGNTEQKASEKPLEQEPMLAARVAIEDGLCLLLDVDDIDRFL
QFNQAPDGGVQLRQRRQVLLEGLAASLQLVDPLGKNGHSVGPAPKDDLVFLRLVSLPKGR
KLLARYLQLLSPIDELMRIVSMAICRHLRFLFGGLPTDPGAADSTNNLARVVSHCVRGMD
LGSLSACLAAVVCSSEQPPLRPLGSPAGDSASLILKSVLERATDLLTDPHAGTNYTITNR
QLWQASFDEFYGLLTKYCVNKYDSVIQSVLMQAPTTSMPVLSADAAKAISREMPVDLLRA
SLPHTDEDQRKLLLDFAQRSMPVVGFNSHEGENGGQISSESVLS
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggatggttttggtagcggcgagaacagtcgttttcaacttaccggctcgcaggatctc
aatcaattaggcgatggttcggcagggggcactgtatttgacgcatcccaatatgcattc
tttggtaatgatgctgtcgaagaagttgagttagggggattagaagatgaagaggaggat
ttgcctcctgctggcctagaggaagaggagtttctctatgacaaggaagagggtgaggac
ttaagatctttatccgaaattgatgatcttgcaagcaccttttcaaagataaacaaggtg
gtcagtggcccaagagttgcaggagtaattggtgaaagaggatctagggaaagttctgct
gctgctgagtgggcagaaggagaggataacattaactggtttcatcgcaatgtagtggac
tccgatagcactttagaaggcaaaagatggtcatcacaaccatattcttccgctcacatt
atagagtcaaagactctgtataggacgtcatcttacccagagcagcagcagcagctccag
cctcattactcaagcgaaccaatattagtgccaaaatcatcttacccttcatatcctcca
ggtggagtatcgcagcatgcttccccaaattatcatgcaggccacctaaatgttcctcat
cctgctggtggaaaccaaatggcattatctgcaccaaaccttcctcctttttccaattct
caggtccagttgaccactttgcatcatggctcccagttcgctgggaatatgccacctggt
ttacctcttggtagccgaccacccaatcaatgggccaatcagatgaacttgtatcctgga
gagcatgcaggtcgattaaacagtgggatacagcagcaatttcctcatcaaaatgggtta
atgcctccacaattaatgcctcaaccacaaccacaatcccagcagcattggctgcgccgt
ccaatgcagccgccttttgggcatttgtcaggaatgcagtcccaattatttaacccccac
ctttcttcatctccaccgttaatgggcaagtttgatgcgatgtttgatcttgctgattta
ggtgagcaaagactaaaattagctcagaaaggtagacaggatctgcgtttttctcagccg
ggatttgatttcaatggcccgaagagtggtagtgggtggccgagatttagatctaaatat
atgtcagctgatgagatagagaatatcctcaggatgcagcttgcagcaacacacagtaat
gacccttatgtagatgattattaccatcaggcttgtcttgctaaaaaaactgtgggggca
aagttgaagcatcatttctgccctactcatctcagggaactccctcctcgagctcgcacg
aacactgaacaacatgcttttctccaggttgatgctctagggagaatttccttttcatca
attcggagacctcgtcctcttcttgaagttgattcacctaattcatctggtgcggctggc
aatactgaacagaaagcatctgagaagcccctggagcaggaaccaatgcttgcagcaaga
gtggctattgaggatgggctttgtcttcttcttgatgtggatgatatagaccgattcctg
caatttaatcaggccccagatggtggggttcagttaagacagaggcggcaggtcctactt
gaaggccttgccgcatcactccaactagtcgaccctcttggcaaaaacggccatagcgtt
gggcctgctcccaaggatgaccttgtgttcttaaggttggtgtctcttcctaagggtagg
aagctcctcgcaaggtaccttcagctcctttctcccattgatgagctcatgaggatagtt
agcatggccatttgtcgtcatttaagatttttgtttggaggacttcccactgacccagga
gcagcagactcaacaaataaccttgcgagggtggtttcacattgtgtgcgcggcatggat
cttggttctctaagtgcctgtcttgcagctgtggtctgttcttcagagcagccacctctt
cgtccccttggtagtcctgctggagacagcgcgtcccttattctcaaatcagttcttgag
agggcaactgatctcctaactgatcctcatgctggcaccaactataccatcactaatcga
caactatggcaggcttcatttgatgagttttatggtcttctcaccaaatattgtgtaaat
aagtatgacagcgtaatacaatcagtgctaatgcaagccccaacgacaagcatgcctgtt
cttagtgccgatgcagctaaagctattagtcgggaaatgccagttgacctgctacgagca
agtcttccccacacggatgaggaccagaggaagctgctgttggattttgctcaaaggtcc
atgcctgtagttggatttaacagccatgaaggggagaatggtggtcaaatcagctctgag
tcggtgttaagttaa
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