Rhodamnia argentea (silver malletwood): 115737659
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Entry
115737659 CDS
T10595
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115737659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rarg03036
]
115737659
Chromosome and associated proteins [BR:
rarg03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
115737659
SWR1 complex
115737659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
DBINO
HDA2-3
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
115737659
NCBI-ProteinID:
XP_030525753
UniProt:
A0A8B8NV90
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All DBs
Position
7:11255388..11270990
Genome browser
AA seq
2049 aa
AA seq
DB search
MASKGPRSKLDHETRARRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
KKVAIRASKGMLDQATREEKKMKEGEQRLRKVALNISKDVKKFWMKIEKLVLYKHQLEVD
EKRKKALDKQLEFLLGQTERYSTMLAENLTDACGTLQQNKTEEHRPSISLEDGDENLTNE
GMELDTVYYAESHPETANDEDFSLQTEDELEDDEQTIEEDEALITEEERKEELEALHNEM
DVPLEELLKQYVAERGDRDSPGGREDAAQQNSDEQDEDECVQKDISAAGETNEYSSVLVT
GRRCAESNGSLSVPKSLVSEMEACKTESSSKILENHKDRVHYDFLEEQEDGDYVLADGDD
KDDEATLLEEEELAKADSYDPMDEITLLQRESEVPVEELIARYKKDIDNDAVSEDESEYA
SALSEDLEDAAGPRYEVPYKESMSESDGDLHANLSDSSPGKAAEAGELNKSESDNRIADA
AAAARSAQPTGNTFSTTKVRTKFPFLIKHPLREYQHIGLDWLVTMYEKRLNGILADEMGL
GKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKF
KRQGWLKPNSFHVCITTYRLVIQDCKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFHS
KRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVEGQEKVNKEVVD
RLHNVLRPFILRRLKRDVEKQLPMKHEHVIYCRLSRRQRNLYEDFIASSETQATLASANF
FGMISVIMQLRKVCNHPDLFEGRPIISSFDMSGIVTQLSSSVCSILSTGPFSGVDLEGLG
FLFTDLDFHLTSWESDEVRSIETPSDLIINRVDLNSQNEDWYSPRRDWKRSHQTNIFEEI
QKALWEERLREAKERAASISWWNSLRCRRRPMYSTSLRDVVTIKHPVYDIHRQKADQSSY
LYSSKLADLVLSPVERFERMTDLVESFMFAIPAARAPEPVCWCSKNDTSVFLHPSWGEKC
SQILLPLLSPVRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTK
MLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGA
DTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILRKANQKRALDDLV
IQSGGYNTDFFKKLDPMELFSGHRTLPFKHMPKEKIFSNGSEVSLSNADVEAALKHAEDE
ADYMALKKVEQEEAVDNQEFTEEAISKMEDDELVNEDDLKDDEPTDQAGPIPTLNKEDAL
TGGSDFNEDRALTLAVKEDDLDMLADVKQMAAAAAAAGQAVSSFENQLRPIDRYAMRVLE
LWDPIIDKRAVDSQVRFEETEWELDRLEKYKEELEADMDDDEEPLVYEKWDADFATEAYR
QQVEALAQHQLEEELELEAKLKEDLDDENCDDKIERPRASKPKSKKKAKKAKFKSLKKGS
LTSDGKQFKGESPEESMFSDDDICLDISDGELPHSTMQKKRKKDEHFEDTDEENPSKKSK
KHDPSRSCVDLDYKPSGKKHGESVDSNILDYMDVDREQKAVSRNRMGGKISITSLPIKRV
FMMRPEKLKKGSIWSRDCVPSPDLWLPQEDAVLSAIVHEYGPNWSLVSDALYGMTAGGFY
RGRYRNPIHCCERFRELIQRYVSSAVDNPNNGKVGHVVSGKGSLKVTEDDIRMLLDVAME
LPDNELLLQKHFTALLSSVWRVTSRVNGQENLSSPRNGLYFSRSILDSVINHSSQNSITE
AARKVKMSNLILSRKLMADALDAVGHQNEIVCPSDQGDEVSAIEEGLEVTLEFQQEKDDL
TIPLPSFLKLSISGSVPSTSASNSTGDKLLKSFGNIAECRFREASRAGAEGSLSCLTSGF
LATDVKTRSAQRPQALGKHKLPVTDSIKSSKSKLKKTSMEFGLTNQPVSEPRPQPMQMLS
VGDPSVRCDFSSPIFDVEAHNFEGDLLSTMDKELSLEPESYDMVPQTYVPDVIAELDDCP
LSPEYTDIG
NT seq
6150 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaaaggtccaaggtcgaagttggatcacgaaacgagagctcgacgccaaaag
gcgcttgaagccccccgagaacctcgtcgccctaaaactcactgggatcatgttttagaa
gagatggtctggctgtcaaaggattttgagtctgagcgtaaatggaaactagctcaagca
aagaaggttgccataagagcaagcaaaggcatgttagaccaggctacgagggaagaaaag
aaaatgaaggaaggggaacaaagattaagaaaagttgctctcaatatttcaaaggatgtg
aagaagttctggatgaaaatagaaaagctggtgctttacaagcatcagttggaagttgat
gagaaaaggaagaaggcgcttgataagcagcttgagtttctattgggccaaactgagagg
tattcaacaatgctggcagaaaatctcacagatgcatgtggaaccttgcaacaaaataag
accgaggagcatcggccaagtatttcacttgaggacggtgatgagaatttgactaatgag
gggatggagctagatactgtctattatgcagaatctcatccagaaactgcaaatgatgaa
gattttagtctacaaactgaagatgagttggaggatgatgagcaaactattgaggaagat
gaggctctcataacagaagaagaaaggaaagaagaattagaagccttgcacaatgaaatg
gatgttccactggaggagttacttaaacaatatgttgcggagagaggtgatagagatagc
ccaggaggaagggaagatgcggctcagcaaaactcagatgagcaagatgaggatgagtgt
gtccagaaggacatttctgctgctggcgagacaaatgaatatagctctgttttagttact
ggtcgtcgttgtgctgaaagtaatggcagcttaagtgtaccgaaaagccttgtttctgag
atggaggcctgcaaaaccgaaagtagttccaagattttggagaatcacaaagatcgggtg
cattatgactttcttgaagaacaggaagatggcgattatgtcctcgccgatggagatgac
aaggatgatgaagcgaccttgttagaagaggaggaattggcaaaagcagattcatatgat
ccgatggatgagattacgttactgcagagggagagtgaagttcctgttgaagaattaatt
gccaggtataagaaggacattgacaatgatgctgtctcagaggatgaatctgaatatgcc
tctgctttatctgaagatcttgaagatgctgcaggacccaggtatgaggtaccatacaag
gaaagcatgtctgaaagtgatggtgaccttcatgcaaatttgtcagactcttctcctgga
aaagccgcagaggcgggagaactgaataaatcagagagtgataatagaattgcagatgcc
gcagcagctgcaagatctgcccagcccacaggcaacacattctcaacaaccaaagtgcgc
acaaagttcccctttcttatcaagcacccactacgtgagtaccagcatattggcttggat
tggcttgttacaatgtatgagaagagactgaatgggattttagctgatgaaatgggtctt
ggaaagacgatcatgaccattgcactgcttgcacatctagcttgtgagaagggaatatgg
ggcccacacctcattgtagttccaacaagtgtgatgctaaactgggaaactgagtttcta
aaatggtgtcctgctttcaaaatcttaacttattttggaagtgcaaaagaaaggaaattt
aagagacaaggttggctgaaacccaactccttccatgtgtgcataaccacttacaggcta
gttatacaggattgcaaagtcttcaagaggaagaaatggaagtacttaattctggatgag
gctcatctaattaagaattggaagtctcagaggtggcagactctcttaaacttccactcc
aagcggcgcattttgttaactggcacgccactgcagaatgatcttatggagttgtggtct
cttatgcactttttaatgcctcacgtctttcaatctcatcaagagtttaaggattggttt
tgtaatccaatctctggaatggttgaaggacaggaaaaggtaaacaaagaagttgttgat
cgcctgcataatgttcttcgtccatttatactccgcaggttaaaaagggatgtggagaag
cagcttccaatgaagcatgagcatgtcatatactgtagactttcaaggagacagcggaat
ttgtatgaggacttcattgctagctccgagacgcaagctactcttgcaagtgcaaatttc
tttggaatgatcagtgttataatgcaacttcgcaaagtatgcaaccatcctgatttgttt
gagggccggccaatcattagttcatttgacatgagtggcattgttactcaattgagttca
tctgtatgctccattttatctacgggacccttctctggcgtggaccttgagggattgggg
tttttatttactgatcttgattttcacttgacatcttgggagagtgatgaagttaggtcc
atcgaaactccatcggacctaatcataaacagggttgatctgaatagccagaatgaagat
tggtattctcctagaagagactggaagaggtcacatcaaacgaatatatttgaagagatc
caaaaggcattatgggaggagagattacgagaagcgaaagaacgtgctgcttctatttct
tggtggaattcattgagatgccggaggagacccatgtactcaacatcactgagagatgta
gttacaatcaagcacccagtttatgatattcaccgtcaaaaggctgatcagtcgtcgtat
ttatattcatcaaagcttgctgacctagttctttcaccggtagaacgctttgagaggatg
actgatttggtggagagtttcatgtttgcaattccagcagcacgggccccagaacccgtt
tgctggtgcagtaaaaatgacacttctgtcttcctgcacccgagttggggggaaaagtgc
tctcagattttattgcctcttctatcacctgttagaccagctattgtccgcaggcaagta
tactttcctgacaggcggctcatacaatttgattgtgggaaattgcaggagctggcgatc
ttgcttaggaagttgaaatctgaaggtcaccgggctttgatttttacccaaatgaccaag
atgcttgatgtattggaagcttttataaatttgtatggctatacttacatgcgattggat
ggctccacccaaccagaggagaggcaaactttgatgcagcgctttaatacaaacccaaaa
atattccttttcattttgtcaacccgtagtggaggggttggtattaacctagtaggtgca
gatacggttattttttatgatagcgactggaatccggcaatggatcagcaagcacaagat
cgatgccacaggattggacaaactcgtgaggtacacatctataggctaatcagtgagagc
accattgaggagaatatattaaggaaagcaaatcaaaagcgggctcttgatgatctggtc
atacagagtggaggctacaatactgacttcttcaagaagcttgatcctatggaattgttt
tcaggtcacaggactcttccctttaagcatatgccaaaggaaaaaatttttagcaatgga
agcgaggtttctttgtcgaatgcagatgttgaagctgctttaaaacatgctgaagatgaa
gcagattacatggcacttaagaaagtcgaacaggaagaggctgtggacaatcaggaattc
acagaagaagcaatcagtaaaatggaagacgatgagcttgtaaacgaggatgatctcaaa
gatgatgagcccacagatcaggctggcccaataccgactctgaacaaggaggatgcactt
actggtggaagtgattttaatgaagatcgagctctcactcttgctgtcaaggaagatgat
ttggatatgctggctgatgttaaacagatggcagcagctgcagctgcagctggacaggca
gtttcatcttttgagaatcaattacgtccaatcgatcgctatgcgatgcgggttttggaa
ttatgggaccctatcatagacaagagagctgtggattctcaggtaaggtttgaggagact
gaatgggaactggatcgtctggagaagtacaaggaggagctggaagctgacatggatgat
gatgaagagcctcttgtgtatgaaaaatgggatgctgattttgcgactgaggcgtaccga
cagcaagttgaggcattggctcaacatcagttggaggaggagctggaattggaagcgaaa
ttgaaggaagatttagatgatgaaaattgcgacgataagattgagcgtcctagggcctcc
aagccgaagtcaaagaagaaagcaaaaaaggccaagtttaagtccctgaagaagggctca
ttgacttctgatgggaaacaattcaaaggcgaatctccggaagaatccatgttctcagat
gatgacatttgccttgacatttcagatggagaattgcctcattcaacgatgcagaagaaa
cgtaagaaggatgaacattttgaggacactgatgaagaaaatccttccaagaagtccaag
aaacatgacccttctagaagttgtgtagatttggattacaagccatccggtaaaaagcat
ggggaatctgtggactcgaatatattagattacatggatgttgaccgtgagcagaaagct
gtcagcaggaacaggatgggaggaaaaatctccattacatcattgccaataaagcgggta
tttatgatgagaccagagaagttaaagaaagggagtatctggtctagagattgtgttcca
tctcccgatttgtggttgccacaagaggatgcagtattaagtgctatagtccatgaatat
ggtccaaactggagcctggtcagtgatgcactatatgggatgactgctggtggattttat
aggggaagatatcgaaaccctattcattgttgcgagaggtttagagaacttattcagaga
tatgtttcatctgctgtggacaaccctaacaatggaaaggttggccatgtcgtctctgga
aaaggttctcttaaagtgacagaggatgacattcgaatgctgctggatgttgccatggag
ttgccagataatgagttactccttcagaagcacttcactgctttgctctcatcggtatgg
agggtgacgtctcgtgtcaatggccaagagaatctctcatctcccagaaatggcttgtac
tttagtagaagcattcttgattcagttatcaaccattcttcacagaactccataactgaa
gctgcaaggaaggttaaaatgagtaatttgattctgagtaggaagttaatggcagatgct
ctagatgctgttggtcatcagaatgagattgtgtgcccctctgaccagggagatgaagtt
tcagctattgaagaaggtttggaagttaccctggaattccagcaggagaaagatgacttg
accattccattgccatcctttctgaagctatcaatatctggctcagttccatcaacttct
gcaagcaattctactggagacaaacttttaaaatcatttgggaacatcgcagaatgccgt
ttcagggaagcgtcaagagctggtgctgaaggaagtctcagttgcttgacctctggtttc
ttggcgactgatgtcaagacccgatcagcacagaggccacaggctctgggaaagcacaag
ctccctgtaaccgactcaatcaagtcctctaagtcgaagttgaagaaaacaagcatggag
tttggccttactaaccagccagtttctgagccccggccccagccaatgcagatgctctcc
gttggagacccgagtgtacggtgcgacttttctagccccatttttgatgttgaggcacac
aacttcgagggtgatttgctttcaacgatggacaaagagctttccttggaacccgagagc
tatgatatggttccacagacctatgttcctgatgtaatcgcggagctagatgattgtcct
ttgtcgcctgaatatactgatattggctag
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integrated database retrieval system
