Rhodamnia argentea (silver malletwood): 115738048
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Entry
115738048 CDS
T10595
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115738048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rarg03041
]
115738048
03009 Ribosome biogenesis [BR:
rarg03009
]
115738048
Enzymes [BR:
rarg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115738048
Spliceosome [BR:
rarg03041
]
Complex A
U1 snRNP components
U1 related factors
115738048
Complex B
115738048
Ribosome biogenesis [BR:
rarg03009
]
Eukaryotic type
Pre-60S particles
Helicases
115738048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
115738048
NCBI-ProteinID:
XP_030526394
UniProt:
A0A8B8NVY5
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All DBs
Position
8:2198000..2203236
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AA seq
504 aa
AA seq
DB search
MSRYDSRSGDPTSYRDRKSDSGFGGAPSYGAPLRSSAGRKDYDGVESPRRTDLDGLTPFE
KNFYVESPSVAAMSDRDVEDYRKRREITVEGQDVPKPVKSFEDVGFPDYVMQEIAKAGFV
EPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAP
TRELAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH
HTNLRRVTYLVLDEADRMLDMGFEPQIRKLISQIRLDRQTLYWSATWPKEVEQLARQFLY
NPYKVIIGSEDLKANHAIRQIVDIVPENKKYNKLVNLLEDIMDGSRILIFMDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELISILEEAGQKVSPDLAAMGRA
APPPPGHGGFRDRGRGYGTGRPWS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctacgacagtcggtccggcgaccccacctcctaccgcgaccggaaaagtgat
tctgggtttggtggagctcctagctatggtgccccactccggtcttcagcaggtagaaag
gattacgatggtgttgagtcaccgaggaggacagatttggatggtttgactcctttcgag
aagaacttctatgtcgagtctccatctgtggctgctatgtcagatagagatgttgaggat
tacaggaaaagaagggaaattactgtggaaggccaagatgtcccaaagcctgttaaaagt
tttgaagatgttggctttccagattatgtcatgcaagaaattgcaaaagctggctttgtc
gaacctacaccaattcaatctcaaggatggccaatggctcttaagggccgtgacctaatt
ggtattgccgaaacagggtcgggaaagacacttgcctacctattgcctgcaattgtccat
gttaatgcacaaccaattttggccccaggagatggccccattgtgttagtgttggcccca
actcgtgaactggctgttcaaatacagcaggaagctacaaaatttggtgcatcatcaagg
ataaaaaatacatgcatatatggtggggttccaaagggtcctcaagtgcgtgatctccag
aaaggcgtcgaaatagtgattgctacaccaggaaggttgattgatatgctggagtcacat
catacaaacctgagaagagtaacctacctcgtgttggatgaagctgatcggatgctagac
atgggattcgagcctcaaataaggaaacttatttcgcagattcgcctggatcgtcagact
ttgtattggagtgctacctggccaaaggaggtcgaacaattagcaaggcagttcctctat
aatccatacaaggtgataataggttctgaagatttgaaggccaaccatgcaatacgccag
attgttgatattgtccctgaaaataaaaaatataacaaattggtaaatttgctggaggat
attatggatggaagccgaatacttatattcatggatacgaagaaagggtgtgatcagata
actcggcaactgcgtatggatggttggccagctctctcaatccatggggataaaagtcaa
gcagaaagggattgggtcctctctgagttcaaagcaggcaaaagtcctataatgactgca
accgatgtcgctgcgcgtggtctagatgtaaaggatgtgaagtacgtgatcaattatgat
tttcctggctcacttgaggattatgtccaccgcattggtcgtactggaagggcgggggcc
aaagggacagcatatactttcttcacagctgcaaatgcgaggtttgcaaaagaattgatt
tccatccttgaggaagctgggcagaaggtcagtcctgatttggcagccatggggcgtgct
gcgcctccccctccaggtcatggaggattcagagatcgtggtagaggttacggtacggga
cggccctggagctga
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