KEGG   Rhodamnia argentea (silver malletwood): 115738216
Entry
115738216         CDS       T10595                                 
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X2
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
rarg  Rhodamnia argentea (silver malletwood)
Pathway
rarg03022  Basal transcription factors
rarg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rarg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    115738216
  09124 Replication and repair
   03420 Nucleotide excision repair
    115738216
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rarg03021]
    115738216
   03400 DNA repair and recombination proteins [BR:rarg03400]
    115738216
Transcription machinery [BR:rarg03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     115738216
DNA repair and recombination proteins [BR:rarg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     115738216
SSDB
Motif
Pfam: Ssl1 C1_4 VWA_2 Zn_ribbon_GTF2H2 IBR Tfb4 VWA
Other DBs
NCBI-GeneID: 115738216
NCBI-ProteinID: XP_030526631
UniProt: A0A8B8NVR6
LinkDB
Position
8:27522542..27526230
AA seq 423 aa
MNNGEGRRLSGQAEEEDDEDDVDDGGLEAWERAYADERSWESLQEDESGLLRPIDNKALY
HAQYRRRLRSLASSNAAARIQKGLIRYLYVVIDLSRAASETDFRPSRMAVVAKHVEAFIR
EFFDQNPLSQIGLVTIKDGVANCLTDLGGSPESHIKALMGKLECSGDSSLQNALDLVCGY
LEQIPSYGHREVLVLNSALSTCDPGDIMETIQNCKKSKVRCSVIGLSAEIFICKHICQET
GGLYSVAIDESHFKELILEHAPPPPAIAEFAVANLIKMGFPQRAAENVISICLCHKEARG
GGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPIAPFDEVTPLRFSSSQHRL
PKSCFGCRQSLLNPGNRPSLSVECPKCKQYFCIDCDIYVHESLHNCPGCESFRHFKTVSS
SEE
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgaacaacggcgagggaaggcggctgagcgggcaagcggaggaagaggacgacgaggat
gacgtcgatgacggaggcctcgaggcatgggaacgggcctacgccgacgagaggtcctgg
gagtctcttcaggaggacgagtccggcttgcttcgtcccatcgataacaaggccctttac
catgctcagtatcggaggcgccttcgctctctcgcttcgagtaatgcagctgctcggatt
cagaagggcctgattcggtatctctacgtcgtcatcgacctctccagggctgcctcggag
accgattttcgacccagccgcatggccgtcgttgcaaaacatgtagaagcttttatccgg
gaattctttgaccagaatccactcagtcaaataggtttagttaccataaaagatggggtt
gctaattgcttgacagatcttggtggaagtcctgaatcccatattaaagctctgatgggc
aagttggagtgctcaggtgattcctcgctgcagaatgccttagatcttgtttgtggatat
ctggaacagattccatcatacggtcatcgggaagttctggtattgaattcagctctaagc
acttgtgaccctggagatattatggaaaccattcagaattgcaaaaaatcgaaagtcagg
tgttccgttattggtctctctgctgaaattttcatatgcaaacacatctgccaagaaacg
gggggattgtactctgttgccatagatgagtctcactttaaggagttgatcctggagcat
gcaccccctcctccagcaatagcagagtttgcagttgctaatttgatcaagatgggtttc
ccccaaagagctgcagaaaatgtaatctcaatttgtttatgccataaagaggctaggggt
ggaggatacacttgtccaagatgcaaagcaagagtgtgcgaactacctacggaatgccgt
atttgtgggctcacccttgtttcttctccgcatttggcgaggtcctatcatcatctattt
cctattgcaccttttgacgaggttactcccttacgtttcagtagttctcagcacaggcta
cccaaatcttgctttggttgtcgacaaagtcttctcaatcctggaaataggcccagccta
tctgttgaatgcccaaaatgcaaacagtatttctgcattgactgtgatatttatgttcac
gaaagtttgcataactgccccggttgcgagagtttcagacatttcaagactgtcagctcc
agtgaagaatag

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