Rhodamnia argentea (silver malletwood): 115738663
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Entry
115738663 CDS
T10595
Name
(RefSeq) nuclear-pore anchor isoform X1
KO
K09291
nucleoprotein TPR
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115738663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115738663
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115738663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
CCDC-167
Motif
Other DBs
NCBI-GeneID:
115738663
NCBI-ProteinID:
XP_048129354
UniProt:
A0ABM3GYE4
LinkDB
All DBs
Position
2:36181207..36208481
Genome browser
AA seq
2052 aa
AA seq
DB search
MPLFLSDDEFSRCSHDAALVAEKADAFIRNLQRELDSFKAQLDASSITAEQTCSLLEQKY
LSLSSDFSQLQSHSLHLQSSLDHRLSDLADLQSQKHRLHLQCMEKDGQIERLTTEVSELH
KSKRQLMELVEHKDLELSDKNATLKSYLDKIVSLTENASQKEARLSEIQAELTRSQATCS
RLSQEKELIERHNVWLNDELKAKIDSAVELRRVNADLEADMSAKLADVERQLADSSTSLN
WNKERARDLEAKLAAVQEELCSTKDSAAANEERFQAEISTVNRLVELYKESSDEWSRKAG
ELEGVIKALETHLAQVENNYKEKLEEELSTRRQLEKEAEDLKAKLEKCEAEMESVRKDNE
SNLLPLSSFSLESWKGGSDPNDMVQDDRSIVPRVPIGVSGTALAASLLRDGWSLAKMYAK
YQEAVDALRHEQMGRKEAEAVLQRVLYELEEKAEAILDERAEHERMVEAYSMINQRLQQA
TSEQLNLERAIRELKADLKKHERDYVLAQQEVVDLQKQVTVLLKECRDIQLRYGSNLHDY
SYDKGTNGAVEMIAEYDTEKVISDRLLTFKDINGLVEQNVQLRTLVRSLSDQIEMKELEF
KEKLEMELKKQTEEAASKVAAVLRRAEEQTVMIESLHTSVSMYKRLYEEEHKLNSSNSHT
AVAVPEEGRMGFQFLIEGSQDAAKKAQEHAAERVRCLEEDLAKSRSKIILLQSERDKMAL
EADFMREKLDRLMNESEHKREETNGVLARNVEFSQLIVDYQRKVRESSESLHSAEELTRK
LNMEVAVLKQEKEILSSAERRACAEVQSLSERIYRLQATLDTIQSAEEVREEARAAEKKR
QEEYIQHIQKEWAEAKKELQEEHDNVRKLTLDRDQSLKNSMKQVEEMGKELASALRAVAA
AETRAAVAEAKLSDLEKRIKSSDSKIVEVANAGGSLSISTNEAYSELQIAKEEIEKLREE
AQANKEHMLQYKSIAQVNESALKQMECAHENFKTEAERLKQSLEAEVVSLRERLSQMETE
VNNKSEQVASMNVEKEEAVASVLAEITSLKEENTLKSSAVGTLETKISLLEDKWKSEHER
WRSAQSNYERQVILQSETIQELTKTSEALASLQQETEGLRRRANSLKSENDELKARWEVE
KSILVESKAEAEKKYNELNEQNKILHDRLGALHIQLAERECTSAGISADDNAGLQSVINY
LRRSKEIAETEISLLKQERLRLQSQLESAQKAAETAQESLRVERASSRSLLFSEDEFKSL
QLQVREISLLRESNLQLREENKHNFEECQKLREETQRVATAHAKMENILMEKQIELEALN
KQIETQRTEKDGLEKRVTELIERCKSIDVEHYDRLKNDVRQMQEKLKEKDTQIEEISMLL
SQKQDRVAQLQQDLEHSRLQLNEKEKRVHEILQTEEKHKRLITQLKRKAETLAKEKEELI
KESQALSKQLEESKQGRRPTGDNLEQVMKEREEKEARIQILEKTVERQREGLKKERERRQ
KIEETIMNSIKRADEEKTKVLRELEKHKQVLRQVSDELEKLKHAKDSLPEGTSVIQFLSG
NLLDDLASGYVLAIENFERVSNTLATELGARASTQDADASLAAAAVSVSAAASQATVSAP
EMTNVAPKTMEEKERRFILPKPSIETRKTGRKLVRPRLKMDEPQDVEMTDAEGSNNVGKV
GPPADTESNIMTSLQHPLRKRLASSVSELHDQSQTQGGGVGDTSAPLMKKSKGVDVSHDA
AQETGGSALEYLNVGLTIEETSDALGDLPQAPSEEAVDEKEDTQVPEEKAEERESQQLEE
ASDPERKNDKNISFEEILDKSGETGIVSNDGSKEPTDQDNINSVAEFASDKEEGELILDA
ADVESGGDVSNLLESPEVEEGKTEQALTPTTSPSRADDVDVGATVTDLSEITSSEVPQHE
KVEDGEITEETAEGSDKVNDGSDAVTVEIEQTPEGAAGSENAGASAEAASLVQSSSSVNA
EVEESKRASPAGGTSTTINLLERARERAALRQAGVVTPPSSRGRARAVRGRSARGRGGRT
GRGQGEPGQSSK
NT seq
6159 nt
NT seq
+upstream
nt +downstream
nt
atgcccctgttcctctccgacgacgagttctctcgctgctcccacgatgccgctctcgtc
gccgagaaagccgatgctttcatccgcaaccttcagagggagctcgactccttcaaggcc
cagctcgacgcctcctccatcaccgccgagcagacctgctccctcctcgagcagaagtac
ctctctctctcctccgacttctcccagctccagtcccattccctccatctccagtcctcc
ctcgatcaccgcctctccgacctcgccgacctccagtctcagaagcaccgcctccacctc
caatgcatggaaaaggatggccagatagagaggctgaccaccgaggtttccgagcttcac
aagtcgaagaggcagctcatggagttggtggagcacaaggacctcgagctttccgacaag
aatgccaccctcaagtcttatctcgataagatcgtaagcttgacagagaatgcttctcag
aaagaggcacgtctcagtgaaattcaagcagaattaactaggagccaggctacctgttct
cggctctctcaggaaaaagagctgattgagcgacataatgtgtggctcaatgatgagttg
aaggccaaaattgacagtgccgttgagttgcgcagagtcaacgctgatctcgaagcagat
atgtctgctaagcttgcagatgtagagagacaattagctgattcctctacttctttaaat
tggaacaaggaaagagcgagggacctagaagcgaaactagcagccgtgcaggaggagcta
tgctcgactaaagattctgcagcagccaatgaggagcgatttcaagcagaaatctctact
gtaaatagacttgttgaattgtataaagaaagtagcgacgaatggtccagaaaggctggc
gagcttgagggtgttattaaagctttagaaacacatttagctcaagtggaaaataactac
aaagaaaaacttgaagaggagttatccaccagaaggcaactagagaaggaagctgaagat
ctaaaggcgaaactggaaaaatgtgaagctgaaatggaatctgtgaggaaagataatgag
tcaaatcttcttcctcttagtagtttcagtctagaaagttggaagggtggttctgatcct
aatgacatggttcaggatgatcggtcaattgtccctagggtaccaataggtgtatcaggg
acagcattagctgcttcccttttgcgtgatggttggagtctcgcaaagatgtatgcaaaa
tatcaagaggcagttgatgcattgagacatgagcagatgggaagaaaagaagctgaagct
gtattacaaagggttttatatgaactagaggagaaagctgaagctattctggatgaaaga
gctgaacatgagaggatggttgaagcatactccatgatcaaccaaaggttacagcaggct
acatctgaacagttgaacctggagagagctattagggagttaaaggctgatctgaagaag
catgaacgagactatgtgcttgctcagcaggaggttgttgatcttcaaaagcaggttaca
gttcttttgaaggaatgccgtgatatacaattacgttatgggtccaatctgcatgattat
tcttatgataaggggacaaatggagcagtggagatgatcgctgaatatgacactgaaaaa
gttatttcagatcggctattgaccttcaaggatataaatggattggttgagcagaatgtt
cagcttagaacccttgttcgcagcctgtctgatcagatagagatgaaagagttggaattt
aaggaaaagttagaaatggagctcaagaagcaaactgaggaagctgcttctaaggttgct
gctgttttacgtagagcggaggagcaaactgttatgattgagtcattgcacacctcagtt
tcaatgtacaaaaggctgtacgaagaggagcataaacttaattcatctaattctcacact
gctgttgcagttccagaagagggaaggatgggcttccagtttcttattgagggttctcag
gatgctgctaaaaaggcacaagaacatgctgcggaacgagtgagatgtcttgaagaagat
ttggcaaagtctaggagcaagattatattattgcagtcagagcgggacaagatggccctg
gaagcagattttatgagggagaaacttgataggctgatgaatgaatctgaacacaagaga
gaagaaacaaatggagttctagcaagaaatgtggagttttcccagttgatagttgactac
caacggaaggttcgtgaaagttcagagtctttgcattctgctgaggagcttactcggaag
ttgaatatggaggttgctgttctgaagcaagaaaaagaaatattgtcatctgctgaaagg
agggcttgtgctgaagttcaaagtttatcagaaagaatttatcgtctccaggctacattg
gacaccattcagagtgccgaggaagtccgtgaggaagcacgagcagcggagaagaaaagg
caggaggaatatatccagcatattcagaaggaatgggctgaggctaagaaggagctacaa
gaagaacatgataatgttcgaaagttgacgctcgatcgggaccaatctttaaaaaattca
atgaaacaagttgaagagatgggaaaggagttggccagtgccttgcgtgctgttgcagct
gctgagactagggcagctgtggccgaggctaaactatctgacctggagaaaaggatcaaa
tcttcagattcaaagattgtagaggtggctaatgctggtggaagtctctctatttcaact
aatgaggcttattcagaactgcaaattgcaaaagaagaaatagagaaactaagagaagaa
gcacaggcaaacaaggagcacatgctacagtacaaaagcatagcacaagtgaatgaatca
gcattgaagcagatggaatgcgctcatgaaaacttcaaaacagaggcagagagattaaag
caatctttggaggctgaagtagtttcactaagggagaggctttctcaaatggaaactgaa
gtcaacaataaatcagagcaagttgcttctatgaatgttgagaaggaagaggccgttgca
tctgtgttagcagaaattactagtttgaaagaagaaaatacgcttaaaagttccgcagtt
ggcacattggaaacaaagatttctctgttggaagataagtggaagagtgagcatgagcgc
tggcgttctgctcagtctaactatgaacgacaggttattctgcaatccgagacaattcaa
gagttgacaaaaacatcagaagctttggcttcattgcaacaggagacagagggattacgc
aggcgggcaaattctctgaaaagtgagaatgatgaattgaaggccaggtgggaagtggag
aagtcaatcctggtggaatcgaaagcagaagctgagaaaaagtacaacgaattgaatgaa
cagaataaaatactacatgatagacttggagctctgcacattcaactggccgagagagaa
tgtacttctgctggaatctctgcggatgacaatgctggcttgcagagtgtgattaattat
ctccgacggtcaaaggaaatagcagaaacggagatatctttgttaaagcaggaaaggttg
cggttacaatcacaactcgagagtgcccaaaaggcagcagaaaccgcccaggagtcactt
cgtgttgagcgtgcaagctcaaggtcattgctgttctcagaagacgagtttaaatcccta
cagcttcaggttagggaaatcagtttgcttcgtgaaagcaatctgcaactcagagaggaa
aacaaacacaatttcgaggaatgccagaaattgcgagaagaaactcagagggttgcaact
gcacatgcaaagatggagaatattttgatggagaaacagattgagttggaagccctcaat
aaacaaattgaaacacagagaacagaaaaagacggcctagagaagagggtcactgagtta
attgaaaggtgcaagagcatagatgtagagcattatgatcgcttgaagaatgatgttcga
caaatgcaggagaagttgaaagagaaggatactcagattgaagaaattagtatgctgctc
tctcaaaagcaagatagagttgcacagttgcagcaggaccttgagcatagtaggttgcaa
ctgaacgagaaagaaaagagagtgcacgaaatattgcagacagaggaaaagcataaacga
ctaataactcaattaaagagaaaggctgagactctggcaaaggaaaaagaggagctgatt
aaagaaagtcaagctctttcaaagcagttggaggaatctaaacaagggagaaggccaacg
ggagataacttggagcaggtcatgaaggagagggaggaaaaagaggccaggattcagatt
ttggagaaaactgttgagagacagagggagggattgaagaaagagagagaaaggcgccaa
aagattgaggaaacgattatgaactccattaaaagagctgatgaggagaaaacaaaagtt
ttaagggaacttgagaagcataagcaagttttgaggcaggtttccgatgagctggaaaag
ctgaagcatgccaaagacagtcttcctgagggaacctcggtcattcagtttctttctggg
aacctattagatgatctcgcctctggctatgtgttggctattgaaaattttgaacgggtt
tcaaatacccttgccaccgagcttggtgctcgtgcttctactcaggatgcagacgcttcc
ttggctgctgctgcagtttcagtttctgctgctgcttctcaagccaccgtaagtgctcct
gaaatgaccaacgtggcgcctaaaactatggaagaaaaggaaagaagattcattcttcct
aaacccagtattgaaactcgtaaaacagggaggaagttggttcggccacgtttgaaaatg
gatgagcctcaggatgttgagatgactgatgctgaaggttctaacaatgttggaaaggtc
gggcctcctgccgacactgaaagtaatatcatgacatcgttgcagcatccgcttcgtaaa
cgtctggcttcatctgtttctgagttgcatgatcagtcacagacccaaggaggaggagtt
ggtgacacttcagcacccttgatgaagaagtccaaaggagtagatgtatcgcatgatgct
gcccaagaaacaggtgggtctgctctggagtatcttaatgtcggactaacgattgaggaa
acttctgatgctcttggcgatctaccccaagcacccagtgaggaagctgttgatgagaag
gaagacactcaggtccctgaggagaaggctgaggaaagggaatcacagcaattagaggag
gctagtgatcccgaaaggaagaacgataaaaatatttcctttgaggagattctggataag
tcgggcgagactggaatcgtgtcaaatgatgggtcaaaggagcccactgatcaagacaat
attaattcagtcgcggagttcgctagcgataaagaagaaggagagcttattctggatgct
gcagatgtcgagagtggtggtgatgtgtctaaccttctagagagtccagaagtagaagaa
ggcaagactgagcaggcattaactcccacaacttcgccatctagggctgatgatgtggat
gtcggagctactgtaacagacctgagtgagatcacttcttctgaagtcccacagcatgaa
aaggttgaagatggtgagataactgaggaaactgctgaaggttctgataaagtgaatgat
gggagtgatgcagtgacggtggagattgagcagactcctgaaggtgctgcaggcagtgaa
aatgctggtgcttctgcagaagctgctagcttggtacagagtagttccagtgtcaacgcc
gaagtggaagagagcaaacgggcttcaccagccggtggcacctcaactaccattaatttg
ttggagagagcaagggagcgagcagccctgagacaggctggagttgtgactcccccatcc
agcaggggccgtgctagagcagtacgtggccgaagtgctcgtggacgtggtggccgtact
gggcgtggccagggtgaaccaggacaaagttctaaataa
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