Rhodamnia argentea (silver malletwood): 115738786
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Entry
115738786 CDS
T10595
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115738786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rarg03041
]
115738786
Enzymes [BR:
rarg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115738786
Spliceosome [BR:
rarg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
115738786
Complex C
U5 SnRNP specific factors
115738786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_11
Motif
Other DBs
NCBI-GeneID:
115738786
NCBI-ProteinID:
XP_030527383
UniProt:
A0A8B8NYN2
LinkDB
All DBs
Position
2:complement(10002122..10010362)
Genome browser
AA seq
2173 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVLTTDTRPRDTHEPTGEPESLWGKIDPRSFGDRAY
RGRPPELDEKLQKAKRKKKERDSLSEPAPRQAKRRRLREESVLTSTEEGVYQPKTKETRA
AYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDTFKNPDKKKEIEKLLNPIPNPVFDQ
LVSIGRLITDYQDTSDAAGSAVANGDEALDDDVGVAVEFEENEDDDEESDLDMVQEDEEE
DEDVAEPNSSSAMQMGAGIDDDDMQEASEGMSLNVQDIDAYWLQRKISQAYEQQIDPQQC
QKLAEEVLKILAEGDAREVETKLLLHLQFDKFRLIKFLLRNRLKIVWCTRLARAEDQDDR
KKIEEEMMGLGPELAAIVEQLHATRATAKERQKNLEKSIREEARRLKDESAGDEDTGRRG
MVDRDAEGSWLKGQRQLLDLDNLAFEQGGLLMANRRTDLPVGSFKHLSKGYEEVHVPVLK
AKPDPNEKLVKISALPDWAQPAFKGMQQLNRVQSKVYETALFSAENILLCAPTGAGKTNV
AVLTILQQIALNRNPDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQEYDVKVRELSGD
QSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV
ARTVRQIETTKEHIRLVGLSATLPNYEDVALFLHVDVNNGLFYFDNSYRPVPLSQQYIGI
TVRKPLQRFQLMNDVCYEKVVAAAGKHQVLIFVHSRKETAKTARAIRDSALANDTLGRFL
KEDGVSREILQSHTDIVKSNDLKDLLPYGFAIHHAGMARADRQLVEDLFADGHVQVLVST
ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTCGEGIIITG
HSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWIGYTYLYIRMLRN
PTLYGLAPDVLTNDITLEERRADLIHTAASILDRNNLVKYDRKSGYFQVTDLGRIASYYY
ITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESL
EEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRSLFEIVLKRGWAQLAEKAL
NLCKMVNRRMWSVQTPLRQFAGIPNEILSKLEKKDLAWERYYDLSSQELGELIRAPKQGR
MLHKFIHQFPKLNLAAHVLPITRSVLRVELAITPDFQWEDKVHGYVEPFWVIVEDNDGEY
ILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQTVLPVSFRHLILP
EKYPPPTELLDLQPLPVTALRNPSYEALYKDFKNFNPVQTQVFTVLYNTDDNVLVAAPTG
SGKTICAEFAILRNHQKGPDSIMRVVYIAPMEALAKERFRDWNSKFGRDGLGMKVVELTG
ETATDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPVLEVV
VSRMRYIASLENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPNVRPAPLEIHIQGVD
IANFEARMQAMTKPTYTAIVQHAKNGKPALVFVPTRKHVRLTAVDLMTYSSAEGGDNPPF
LLCSFEDVETFIDSISEETLRTTLRHGVGYLHEGLSSLDQQVVTKLFEAGRLQVCVMSSS
MCWGVPLSAYLVVVMGTQYYDGRENAHTDYPVTDLLQMMGRASRPLIDNSGKCVILCHAP
RKEYYKKFLYEAFPVESHLQHFLHDNLNSEIVAGVIENKQDAVDYLTWTFMYRRLTQNPN
YYNLQGVSHRHLSDHLSELVENTLNDLEASKCVLVEDDTDLSPLNLGMIASYYYISYTTI
ERFSTSLTSKTKMKGLLEILSSASEYAQLPIRPGEEDAVRRLIHHQRFSFENPKATDPHM
KANALLQAHFSRQPLGGNLASDQREVLLSASRLLQAMVDVISSSGWLSLALLAMEVSQMV
TQGMWERDSMLLQLPHFTKDLAKKCLENPGKTIETVFDLLEMEDVERQELLQMSDSQLLD
IARFCNRFPNIDLTYEVLNDDSVGAGDDITLQVTLERDMEGRTEVGPVDAPRYPKAKEEG
WWLVVGDTRTNQLLAIKRVSLQRKSKVKLEFTAPPEAGKKTYSLYFMCDSYLGCDQEYNF
TVDVGEPMAADEE
NT seq
6522 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatctgggaggaggtgccgaggcgcacgctcgcttcaagcagtacgagtacagg
gccaactcgagtctggtcttgacgaccgatacgcggccccgcgacacccatgagcccacc
ggcgagcccgagtctctgtgggggaagatcgatcctaggagcttcggcgaccgggcgtac
cgaggtaggcccccggagctcgatgagaagctccagaaggctaagaggaagaagaaggag
cgggactcgctctcggagcccgcccctaggcaggccaagaggcgccggcttcgagaggag
agcgtgttgacctctacggaagaaggggtttaccagccgaagacgaaagagactagggct
gcatacgaggcgatgctcagtgttattcagcagcagttgggtgggcagccattgaatata
gttagtggtgcagcagatgaaattttggccgtgttgaagaatgatacgttcaaaaatcct
gataagaagaaggagattgagaagttgttgaaccctattccaaaccctgtttttgatcag
ctcgtttcaattgggaggcttatcactgattaccaagacacgagtgatgccgctgggtct
gctgtggctaatggggatgaggcacttgatgatgatgtgggtgttgcagttgagtttgaa
gagaatgaagatgacgacgaggagagtgatctcgatatggtccaggaggacgaagaggag
gacgaagatgttgcagaaccaaacagttcttcggccatgcagatgggtgctgggatagat
gatgatgatatgcaggaagctagtgagggcatgagcttgaatgttcaggacattgatgct
tattggcttcaaagaaagatttctcaggcttatgaacagcagattgatccccagcagtgt
cagaagcttgcagaggaggtgctgaagatacttgctgaaggggatgctagggaggttgag
accaagctattgttgcatcttcagtttgataagttcagactcattaagtttttattgcgg
aataggttgaagatcgtctggtgcacccgtttggctagggctgaagaccaagatgaccgg
aagaagattgaagaagaaatgatgggtttgggaccggagttggctgcaatagtggaacag
ttgcatgccacaagagctactgcaaaagagaggcaaaagaatttggagaagagtattagg
gaagaggctcgtcgtttgaaggatgagagtgctggagatgaagatacaggtcggagaggt
atggttgatagggatgcggaaggtagttggttaaagggacagcgtcagttactcgacctc
gacaaccttgcttttgagcaaggtggccttttgatggcaaatagaaggaccgatcttcct
gttggctccttcaagcatctcagcaaaggatatgaagaagttcatgtgccagtgttgaaa
gctaaaccagatcccaatgagaagcttgttaaaatatctgccttgcctgattgggcacaa
cctgctttcaaagggatgcaacagctgaaccgtgttcaaagcaaagtctacgagactgct
ctttttagtgcagagaacatcctcttgtgtgctcctactggagctgggaaaactaatgta
gccgtgctgaccatactccagcaaatcgctttgaacaggaatccagatggatcatttaat
cacagcaactataagattgtttatgtggcacctatgaaagcacttgttgccgaagttgtt
ggtaatctgtctaaccgtttgcaagagtatgatgtcaaggtgagggagttgagtggtgac
cagtcattgactcgtcagcaaatcgaagagactcagatcatcgtcacgacccctgagaag
tgggatatcattactcgaaaatcgggagatcgtacctacacgcagcttgtgaagcttttg
atcattgatgagattcatctcctccatgataatagaggacccgtacttgagagcattgtt
gccagaactgtcagacaaattgaaaccacaaaagagcacattcgattggtgggattgtca
gctacattgcccaattatgaggatgttgcgttgttcttgcatgtagatgttaacaacgga
ctattttattttgataatagttacagacctgtccctctttcccagcagtatatcggaata
acagtcaggaagccgctgcagaggtttcagttgatgaatgacgtgtgctatgaaaaggta
gtagctgcggcagggaagcatcaagttcttatttttgtccactccaggaaggaaacagcc
aaaactgctcgagctataagagattctgcactcgctaatgatactcttggtagattcttg
aaagaggatggtgtgagccgcgaaattctacaaagtcacactgacatcgtcaagagcaat
gatcttaaggacctcctgccttacggttttgccattcatcatgctggcatggcgagggca
gataggcaacttgttgaggatctcttcgctgatggtcatgtgcaggttttggtttcaaca
gcaactcttgcttggggtgtcaacttacctgcacacactgtgatcatcaagggaacacag
atatacaatccagagaagggagcatggaccgaattgagtccgctggatgttatgcagatg
ctgggtcgagcaggacgacctcagtacgatacctgcggtgaaggaataatcatcactggc
catagtgaactacaatactatctgtctttgatgaatcagcagctacctatagaaagtcag
tttgtctccaaattggctgatcagttgaatgccgaaattgttcttgggactgttcagaat
gctagagaagcatgcaactggattggctacacatacttgtatatccgtatgctgcggaat
cctacactatatggtctagcgccagatgttctcactaatgatattacgctggaggagaga
agggctgatttgattcatactgctgctagcatcctggataggaataatttggtcaagtat
gataggaaaagcggatacttccaggttactgacttgggtcgcatagctagttactattac
ataacacatgggacaatatccacgtataatgaacacttgaagccgacaatgggggatatt
gagttatgtcggttgttctcactgagtgaagaatttaagtatgtgacagtgagacaggat
gagaagatggagctagcgaagcttttggatcgagttcccatacctgtgaaagaaagtctg
gaggagcctagtgccaagatcaatgtcttgcttcaagcatacatatctcagctaaagctt
gaagggctttcattgacttcagatatggttttcataactcagagtgctggacgtcttctg
cgatctctttttgagattgtccttaaaaggggatgggcacagttggctgagaaggctctg
aacctctgcaaaatggtcaacaggaggatgtggagtgtccaaacaccacttcgtcaattt
gctgggattcctaatgagattctttcaaagttggagaagaaggatttagcctgggaaagg
tactatgacctctcttcgcaagagttaggagagctaattcgtgcaccaaagcagggaaga
atgttgcataagtttatccaccaattcccaaaattgaaccttgcagcacatgttctgcca
attactcgatctgtcttgagagttgaactcgcaattacaccagactttcagtgggaggac
aaagttcatgggtatgtggaaccattttgggtgattgtggaggacaatgatggagaatac
attcttcatcatgaatactttatgctgaagaagcagtacattgatgaagaccacactctg
aatttcacggttccaatctatgaacctttgccacctcagtacttcattcgtgttgtgtca
gataggtggctggggtcacaaactgttttgcctgtttccttcaggcatcttattttaccg
gaaaagtatcctccaccaacagagttactggacttacaaccactgcctgtgactgcttta
agaaacccatcgtatgaagccttgtataaggacttcaagaatttcaatcctgttcaaact
caggtcttcaccgtgctctacaacacagatgacaatgtccttgttgctgccccgactggg
agtggaaagaccatatgtgcagagtttgctatcttaagaaatcaccagaaaggacctgat
agtatcatgcgtgttgtttatattgctcctatggaagctctggccaaagaacgcttccga
gattggaatagcaagtttgggagggatggtcttgggatgaaggtggttgaactaactggg
gaaactgcaacagacttgaaattgcttgagaagggtcagattatcatcagcactccagag
aagtgggatgccttatctcgtagatggaagcagcggaagcatgttcaacaggttagtctt
tttataattgacgaactccacttgattgggggtcaaggtggtccggtattggaggtggtc
gtctctaggatgagatatatagcaagtctggagaacaagattcgaattgtggctctgtct
acttcactcgcgaatgcaaaggatcttggtgaatggattggcgccacttcccatggtctt
ttcaacttcccacccaatgtccgccctgctcccttggagattcacatccaaggagtggac
attgctaattttgaggcaaggatgcaagcaatgacgaaaccgacatacacagcaattgta
cagcatgccaagaatgggaagcctgctctagtgtttgttcccacgagaaagcatgtccga
cttactgcggtggacttgatgacttattcaagtgcagaagggggggacaatcctccattt
ttactttgctcctttgaagatgtggagacttttattgacagcattagtgaagaaacgttg
aggaccaccttgcgacatggggttggctatttgcacgaggggttgtctagtcttgaccaa
caggtggtcacaaagctctttgaagctggtcgtcttcaggtttgtgtcatgagcagttcc
atgtgttggggagtgcccttatcagcgtacttggtagtggtcatgggaacacaatactat
gatgggcgggagaacgcacacacagattaccctgtcacagatcttttgcagatgatgggt
cgtgctagccggccattgatagataattccggaaaatgtgttatcctttgccatgcgcct
cggaaggagtactacaagaaattcttgtacgaggctttccctgtggagagccatttgcag
cacttcctgcacgataatctgaactcagaaattgttgcaggagttattgagaacaagcag
gatgccgtggattacctgacttggactttcatgtacaggaggctgacgcaaaacccaaat
tactacaatctacagggggtgagccataggcatctgtccgatcacctctccgagcttgtg
gagaatactttgaacgacctggaagctagtaaatgtgtccttgttgaggatgatacggac
ctttctcctttaaatcttggcatgatagcatcatactactatatcagttatactacaatt
gagcggttcagtacttccttgacttctaaaacaaagatgaagggtcttctggagattctg
tcgtctgcttcagaatatgcacaactccccattcgaccgggagaggaggatgctgttcgg
aggcttattcaccaccagaggttttcctttgaaaaccccaaagccacggacccacatatg
aaggccaacgccttgcttcaggcccacttctcgaggcagcctctgggtggcaatttggcg
tcggatcaacgggaggtcctcctttctgctagcaggttgcttcaggcgatggtggatgtt
atatcaagtagtgggtggctgagccttgcgcttcttgcaatggaagtaagccagatggtg
acacaaggcatgtgggagcgcgattcgatgcttctacagctcccgcatttcaccaaggat
ctggccaagaaatgcctggagaaccctgggaagactatagagaccgtgtttgatctgctg
gagatggaagatgtggagaggcaagagctacttcagatgtcggactcccagctgctggac
attgcaaggttttgcaaccgtttccccaacattgacctcacctatgaggtactcaatgac
gacagtgttggtgctggggacgacataacgctgcaagtgacgctcgaaagggacatggag
gggagaactgaggtgggcccagtcgatgcccctaggtatcccaaagccaaggaagaaggg
tggtggctcgtcgttggtgacacgaggaccaaccagttgcttgccatcaagagggtgtcc
cttcagaggaagtccaaggttaagctcgaattcaccgctcctccagaagccggaaagaag
acgtacagcttgtacttcatgtgcgactcgtacctgggctgcgaccaggagtacaatttc
acggtcgacgtaggtgaaccaatggctgctgatgaagagtga
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integrated database retrieval system
