Rhodamnia argentea (silver malletwood): 115739503
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Entry
115739503 CDS
T10595
Name
(RefSeq) uncharacterized protein LOC115739503
KO
K06100
symplekin
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
rarg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115739503
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
115739503
U7-dependent histone pre-mRNA processing factors
115739503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
PELP1_HEAT
Motif
Other DBs
NCBI-GeneID:
115739503
NCBI-ProteinID:
XP_030528484
UniProt:
A0A8B8P1Q5
LinkDB
All DBs
Position
2:complement(19839755..19869129)
Genome browser
AA seq
1414 aa
AA seq
DB search
RLVYLCLSPCVDPETVFRSSSSSLIPFASKAFLFLCTTRSRLSLSPFHETTKPRHPDTET
SVATLQTLRRIPNPPAVARIASPRMASRDQALSLLAAANNHGDLAVKLSSLRQAKDILLS
IDSPLASELLPYLAELQSSPESLVRKSLVETVEELGLKMLEHSCVLMPVLLAYTRDVDCM
VAKQSIISGSKIFCRVLEEMAVQLNIRGKIERWLEDIWLSMLKFRDNIVAKAMEPGIIST
RLLALKFLERYVLLFTPDNNDLGKPLPEGGQVFNISRLTGRHSIMDPVLFVSEAGMILDY
LLDMLASSLPGCLAIAVINCLASIGRKRPQHFSTVFSALFAFNLNCETEKGYHAASVRYS
MRTAFLGFLRCTSPAILESRERLLGTLRAMNAGDAAEQVIRQVEKLARNAERASRDARFL
KEDHSSSQMSTHGSLIKKRPISQDEEMLAHNLEVASKRGRYIADTNSTFPGQQTADSGHG
STSANGVTPNVSMLNGDLSPVEQMIAMIGALLAEGERGAESLEILISKIHPDLLADIVIT
NMKHLPKIPPPLIRLGKSEVTGQLGSASSPAQVMAPSFLPANSIPSPKSATQIPYSSASI
TSESFPEASIVSSVPADSKRDPRRDPRRQDPRLVVPPEAALPTVDDSGDVQSKLDESNSN
KPQLSVMVGVKTASSPLIFRKKSDDEILGSSLHDTSELIPKEEVPDDFKETEPTSEVGLS
SDVAFSSEQITEDDIVKAEDMQMDESETPSNVALDQCPPAVANMAAFEETGKDLPVVPSY
IELNGEQEANIRKLLFKQIIESCKRPNGKECGCMGMSLIARLVAQSAADDDLVGILKNHI
LEDYQLQKGHELVLEVLYYLHSISGSDSAESSVYAVTYEKFLLEVAESLLLKFPASDKSL
NRLLGEAPVLPSSVLKLLDDLCNSDISDYLGKSLRDADRVTQGLGAVWSLILGRSHCRQS
CLDIALKCALHSQEEIRAKAIRLVANKLFQLSYVAETIENFAKSMLFSAVNQNASDVEVC
QPGSNEQADEGKIGSQSTSSSSSQVPFSEAATFEGESTGGAQPLGQGISSLSLSEAQRLV
SLFFALCMKKPSLLRLVFDAYGQAPRPVKQAVHRQIPILIRALGSSYSELLQIIADPPQG
SENLLMLVLQILTEETVPSPDLITTIKHLYETKLKDVSILIPMLPSFSKSEVLPIFPGLV
NLPPEKFQKALAHILQGSAHTGPALTPAEVLVAIHDIVPEKDAVSLKKVMDACSACFEQR
TVFTQQVLAKALNQMVDRTPLPLLFMRTVIQAIDAFPALVDFVMEILSKLVNKQVWKMPK
LWVGFLKCVSQTQPHSFGVLLQLPPPQLESSLNKYANLRGPLAAFASQPNIRASLPRTTL
SVLGLTSESHVPQPHVSASLASGASTSVHGTTMT
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
cgccttgtctatctctgcctctctccgtgtgtcgatcctgagacggtgttccgttcatcg
tcttcttccctcatcccctttgcttcaaaagcttttctatttctctgcactactcgctcc
cgtctctctctttctcccttccatgagactacgaagcctcgccaccccgatacggaaacc
tccgttgcgaccctccaaaccctaagaagaatccccaatcctccggccgtcgcgcgcatt
gcctccccccgcatggcttccagggaccaagctctctccctcctcgccgccgccaacaac
cacggcgatttggccgtgaagctctcttccctcaggcaggccaaggacattctgctctcg
atcgactcccccctcgcttccgagctcctcccttatttggccgagctccagtcttcgccg
gagagcctcgtccggaaatccctcgtcgagactgttgaagaacttggactgaaaatgttg
gagcattcttgtgtgttaatgccggtattactggcatatacaagagatgttgactgtatg
gttgctaagcaatctataatcagcggtagcaaaatcttttgcagagttctagaggagatg
gcagtgcagctaaacatccgtggtaaaattgagagatggcttgaagatatttggctgtcc
atgctcaagttcagagataacattgttgccaaggcgatggagcctggcattattagtaca
agattgttggcactgaaatttttggagagatatgtcttacttttcacacctgacaacaat
gatttgggaaaacctctgccagaaggtggacaggtgtttaacatttcacggctcactggg
aggcactctatcatggatcccgttttgttcgtgtcagaagcagggatgatcctcgactac
ttactggatatgttggccagtagtcttccggggtgtctggcaattgcggttataaattgt
ctggcatccataggaagaaagaggccgcaacacttcagcactgtcttctcagcacttttt
gctttcaatttgaactgtgaaacggagaaggggtatcatgctgccagtgttcgttattca
atgagaactgcctttttaggatttcttaggtgtactagtcccgccattctagagtctcgg
gagagattgctcgggactctacgagcaatgaatgcaggggatgcggcagagcaagtaatt
cgacaagtggagaagttagctagaaatgctgagcgtgcatcacgtgatgcccgttttctc
aaggaagatcattcttcaagccaaatgtccactcatggaagtttgattaagaaaaggcca
atttctcaagatgaagaaatgttagcccacaatctggaagtggcatccaagcgaggtcga
tatattgctgataccaactcaacttttccaggtcaacaaactgctgattctggccatggt
tcgacctccgcaaatggtgttacccccaatgtttcaatgttaaatggtgatttgtcacct
gtggaacaaatgattgctatgattggtgctttgctggccgaaggagaaagaggcgccgaa
tcacttgaaatccttatttccaaaattcatcctgatttactagccgatattgtgataact
aatatgaaacacttgcctaagattcctccacctttaataaggcttgggaaatccgaagtt
actggacagttaggttctgcaagtagtccagcacaagtcatggcaccttcttttcttcct
gcaaattctattccatctccaaagtccgccacacagataccatattcttctgcttctatt
accagcgaatcatttcctgaagcatccattgtcagtagcgtccctgcagattctaaacgt
gatccaagaagggatccccgccgccaggatccacgattagtagtgcctcctgaagctgca
ttacccactgtggatgactctggggacgtgcaatctaaattggatgaatctaattcgaat
aagccacagttatctgttatggtgggtgttaaaacagcttcgtcacctttaatatttaga
aagaaaagtgatgatgagattttgggatcatctttgcatgataccagtgaattgattcca
aaagaggaggttccggatgattttaaggaaactgaacctacttctgaagttggtctttct
tcagatgttgcattttcttctgaacaaataactgaggatgatatagtgaaagcagaggac
atgcagatggatgaatctgagacaccatcaaatgtggcattagatcagtgtcctccagct
gttgcgaacatggcagcgtttgaggagacaggaaaggacctgcctgtcgttccatcctat
atcgagctcaatggggaacaggaagccaatatcagaaaattgttgtttaagcagattatt
gagtcatgcaagcgtccaaatgggaaagaatgtggctgtatggggatgtcattaattgct
cgacttgttgctcagagtgccgcagacgatgatttagttgggatactgaagaatcatatc
cttgaggattaccaattacaaaaggggcatgagcttgtgttggaagtcctctattatcta
cattctatatctggatctgattcagctgaaagctctgtatatgctgtcacatacgagaaa
tttctcttggaagtggctgaatctttgctactgaagtttccagcttctgacaaatcattg
aatagacttcttggtgaagctccagttttgcccagttctgtcttgaaacttctagatgat
ctctgcaattctgacatttctgattaccttggaaaaagtctgcgtgatgctgatcgtgtc
acccagggccttggtgctgtatggagtttgattttgggccgttctcattgcaggcaatcc
tgcttggatatagctttgaagtgtgctcttcattcacaagaggaaatccgagctaaagct
attcgtctggtggctaacaaactctttcagctgagttatgttgctgaaactattgagaat
tttgcaaaaagtatgttattctcagctgttaatcagaatgcttcagatgttgaggtttgc
caacctggctcgaatgaacaggcggatgaagggaagattggaagccagagtacttccagc
agtagttctcaagttccattttcagaggctgcaacttttgaaggtgaatctacgggtggt
gcacaacctctgggccagggcatctcttctttatctttgtctgaagctcaacgactcgtt
tctttgttttttgctttgtgtatgaagaaacctagtctacttcgccttgtgtttgatgct
tatggtcaagcaccaagacctgtcaagcaggctgtgcatcgccaaatcccaattcttata
cgggccttggggtcatcttattctgaattgctgcaaataatagcagatccgcctcaagga
agtgaaaatcttttgatgctggtgctgcaaatattgaccgaggaaacagtaccttctcca
gatctgataaccaccatcaaacatttatatgaaactaagctgaaggatgtttcaatcctc
atcccaatgttaccctcattttccaaaagcgaggttttacccatcttccctggactggtg
aaccttccaccagaaaagttccaaaaggcacttgcccacatattacagggttcagctcat
actggtcctgctttgacaccggcagaagtgttggttgccatacatgatattgttcctgag
aaagatgctgtttcgctgaaaaaggtaatggacgcttgctcagcttgttttgagcaacgg
acagtttttacccagcaggtgttagcgaaggctttgaaccagatggttgatcgaactcca
ttgcctcttctgttcatgagaacagttattcaggcaattgatgcctttcctgcgctggtt
gactttgtgatggagatactctccaaattggttaataagcaggtttggaagatgcctaag
ctttgggtgggcttcttgaaatgtgtatcccagactcagccacattctttcggtgtattg
ttgcagttgcccccgccacaacttgagagttctctaaataaatatgcaaacttgagaggg
cctcttgctgcttttgcaagtcaaccaaatataagagcttcacttcccaggaccactcta
tcggttcttggcctcacaagtgaaagtcatgttccgcaaccacatgtctcagcttctctg
gcctcaggcgcaagcacttcagtccatggaacgacgatgacgtga
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