Rhodamnia argentea (silver malletwood): 115739998
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Entry
115739998 CDS
T10595
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115739998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115739998
03012 Translation factors [BR:
rarg03012
]
115739998
Enzymes [BR:
rarg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115739998
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115739998
Translation factors [BR:
rarg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115739998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
dsrm
Helicase_C
DEAD
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
Dicer_dimer
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
115739998
NCBI-ProteinID:
XP_030529193
UniProt:
A0A8B8P5L7
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All DBs
Position
5:7701003..7717408
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AA seq
1223 aa
AA seq
DB search
MPSSSSSKLLPPSHPPQLALHSTLFLGAPNPPPSPISFRMKDRPPSSHGGVYIPPHQRLR
SVITTPNYSSSTPAAASADAATSRGHHSQAVAVPVPAPSPARASPPTSTAHQRQQLQQQQ
LNKRNYPQYNSANSDGASEDGSDREFESSWSQGSTFSGSIDGWKRKLNMLLCNKEKQELV
SKDKKDRRDFEQIAALARKMGLYSQVYAKAVVFSKVPLPNYRFDLDEKRPQREVSLPLGL
LRRAEAYLGEYFSQKPRYTERSPYDSFSRCSSSSSIATEEGLFEQPEPLASSKSVMEKVF
ARRSLQLHEKQQAWQESLQGRKILEFRKNLPAYKEKDVLLTAIVQNQVVIISGETGCGKT
TQIPQFILESQIDSGRGALCNIICTQPRRISAMSVSERVASERGEILGDSVGYKVRLEGM
KGKDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRSEL
RLILMSATLDAELFSSYFGGAPIIRIPGFTYPVRTHFLENILETTGYRLTPYNQMDDYGQ
EKMWKMSKQAPRKRKSQIASVVEEALGAADLKDYSLQTRESLACWNPDCMGFNLIEYVLC
HICENEGPGAVLVFMTGWDDISSLKEKLQSHPLLGDPNRVLLLACHSSMASSEQRLIFDE
PADGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQR
KGRAGRVQPGECYHLYPKCVYDAFSEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRAL
QSPELLAVQNAIEYLKTIGSLDENENLTVLGRYLSMLPMEPKLGKMLVMGAVLNCLDPIL
SVAAGLSVRDPFLTPMDKKDLAEAAKAQFSRDYSDHLAIVRAYEGWKDAEVDFAGYEYCW
KNFLSVQSMKAIDALRRDFFSLLRDTGLVDGNPTTSNQWSHDEHLIRAVICYGLYPGISS
VVHNEKSFSLKTLEDGQVLLYSNSVNARESQIPYPWLVFNEKIKVKSVFLRDSTAVSDSM
LLLFGGSFSRGDTDGHIKMLGGYLEFFTNPAIANMYTSIKQELDELIQMKLHNPRMDIHS
HHKLLSAVRLLLAEDKGYGKFIFGRQILMPSNTTQALVQPTTISRTESGPGGDNSKSQLQ
TLLTRAGYAAPTYKTKQLKNDQFRATVEFNGMQIMGQPSTNKKSAEKDAAAEALQWLMSG
TQPGHEYIKQMSMLLKKSKKDHQ
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgccctcctcatcttcctccaagctccttcctccttcacatcctcctcaactcgctctc
cactcgaccctcttcctcggagctccaaaccctccgccgtctccgatctccttcaggatg
aaggaccggcctccgtcgtcgcacggcggcgtctacatccctccccaccagcgcctccgc
tccgtcatcaccacccctaactactcctcctccactccggctgctgcttccgcggacgcc
gccacttcgcgcggtcatcacagccaagccgtcgccgtccccgtccccgccccgagccct
gcgagagcttctccgcccacttcgacagctcaccagcggcagcagctgcagcagcagcag
ctcaacaagaggaattatccgcagtacaattcagctaacagtgacggcgcgtccgaggat
ggttcggatcgcgagttcgagtcgtcttggtcgcagggttcaacgttttctggtagcatt
gatgggtggaaacggaagctaaacatgcttttgtgcaataaagaaaagcaagaattggtc
tcaaaggacaaaaaggacaggcgtgattttgagcaaatagcagctctggcgcgcaagatg
ggtttgtatagccaagtgtatgcaaaagcggttgtcttcagcaaggttcctctgcctaac
tatagatttgatctggatgagaagcgtccgcagagggaggtaagcttacctcttggtctg
ctaagaagagctgaggcatatctaggggagtacttttctcagaagcctagatatacagaa
agatctccatatgattccttttcaagatgcagtagtagcagtagcattgctactgaagaa
gggctttttgaacaaccggagccactggcatccagtaagtccgtgatggagaaagttttt
gctcggagaagtttgcaactccacgagaagcagcaagcttggcaggaatctctgcaagga
agaaaaatactggaatttcgtaaaaatctacctgcctataaggagaaggacgtattatta
acggccattgtgcaaaatcaggttgttatcatctcaggtgaaactggctgcggcaagact
acacagattccccaatttattttggaatcacagatagattctggacgtggagcactttgt
aatatcatatgcacacaaccaagaaggatatcagccatgtctgtttctgaaagagttgct
tcagaaagaggagaaatattgggtgactctgttggatacaaggttcggttggagggcatg
aagggcaaggatacacgccttctcttttgcactacaggcatattgttgagaaggttgctg
gtcgatagaaacttaaaaggtgtaactcatgttattgttgacgagattcatgaacgtgga
atgaatgaagattttctgcttattgtcctaaaagatctacttcctcgtcggtcagaactg
aggttgattttgatgagtgccaccttggatgctgaacttttctcgtcctatttcggtgga
gctccaataattcgcattccgggatttacatacccagtgcggacccattttctggaaaat
atactagaaacgacgggctacaggttgactccttacaatcagatggatgactatggtcaa
gaaaagatgtggaaaatgagcaaacaagctcccagaaagagaaagagtcaaattgcctct
gttgttgaggaagcacttggagctgcagatttgaaggattatagcctccagactagagag
tctctcgcgtgttggaatcctgactgtatgggctttaatcttatagaatatgtgctatgc
cacatatgtgagaatgaaggaccaggtgctgtgctggtctttatgacaggatgggatgac
ataagttcactgaaggaaaaactccaaagtcatccattattgggagatcctaatcgagtt
ttattgcttgcatgccatagttcaatggccagttcggagcagaggttaatatttgatgaa
ccagcagatggtgtaaggaaaatagtgctcgcaaccaatattgctgagacaagtattaca
ataaatgacgttgttttcgttctcgactgtggaaaggctaaagagacctcatatgatgca
ctgaataacactccttgcttgcttccttcctggatttctaaagtttctgcgcagcagcga
aaaggaagagcaggtcgagttcaacctggagaatgttaccatctttatcctaaatgtgta
tatgacgccttttcagagtatcagttgccagaaattttgagaacgcccttgcagtcgctt
tgtttacaaataaaaagtttaaaacttggaagtatttctgagtttctttcaagagctttg
cagtccccagagttgctagcggttcaaaatgctattgagtacttaaaaactattgggtct
ctggatgagaatgagaatttgaccgtattaggccgctacctttctatgcttccaatggag
cctaaacttgggaagatgcttgtaatgggagccgtcctaaattgcctggatccaatactt
tctgtcgctgctggcctcagtgtgagagatccttttctaacgccgatggacaagaaggat
ttagcggaggctgcaaaagcacagttttctcgtgactacagtgaccatcttgcaattgtc
cgggcctatgaggggtggaaggatgctgaagtagattttgctggatatgagtattgttgg
aaaaattttctgtcagtacagtccatgaaagctattgatgctcttcggagggacttcttc
tctttgcttagggacactggccttgttgatggaaacccaaccaccagcaaccaatggagc
catgacgaacatctcatccgtgcagttatatgctatggcctgtatcctggtatttcttct
gttgtgcacaatgaaaagtcattttccctgaaaactttggaagacggccaggtgcttctg
tattcaaactctgtcaatgctcgggaatcccaaataccttatccatggctagttttcaat
gaaaagattaaagtgaagtctgttttcctccgcgattctacagctgtgtcagattcaatg
cttctcctgtttggtggaagtttctctaggggggatacggatgggcacataaagatgtta
ggaggatatctggaatttttcacgaatcctgcaatagcaaacatgtacacaagcattaaa
caagaacttgatgaactgattcaaatgaagctacataatcccaggatggatatacactcc
catcataagctcctatctgctgtaaggctgctgctagcagaggataaaggttatggtaaa
ttcatttttggccgtcagattttgatgccctcgaacacgacccaggcactagtgcaacca
accacaatctcacgcactgagagtgggcctggtggtgataattcgaaaagtcagctgcaa
acactgctcacaagggcaggatatgctgcccctacctataagacaaagcaattgaagaac
gatcagtttcgagcaacagttgaatttaatgggatgcagatcatgggtcagccgtccacc
aataagaagagtgcggagaaggatgcagctgctgaggctctgcagtggctgatgagtggt
actcaaccgggtcatgaatacataaaacagatgtcgatgctgctgaagaaaagcaagaag
gaccaccaatag
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