Rhodamnia argentea (silver malletwood): 115741110
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Entry
115741110 CDS
T10595
Name
(RefSeq) RNA polymerase sigma factor sigC isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
rarg Rhodamnia argentea (silver malletwood)
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rarg03021
]
115741110
Transcription machinery [BR:
rarg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
115741110
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Peptidase_S30
Motif
Other DBs
NCBI-GeneID:
115741110
NCBI-ProteinID:
XP_030530690
UniProt:
A0A8B8P765
LinkDB
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Position
4:20641743..20663951
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AA seq
553 aa
AA seq
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MGFRLNLKCVVPVQSHLLSNSPTRLSPSVRGKEASFSSGRLSSLSSIAEEVEPCHKYHSR
ACKCSSASTPTLEDDLSKMTDTKVIIGKRPFSSINSDTGGIHISHRASNSKGNTSLQSVK
AAHYSLLMENLNALEDTLTDSDALILERDILLQLGRLGALKLFHACLSKAFDGPDACEVS
DALVEKKMSSKRDNHVKRIIRSGKRETRKSRSERKSSKPNQNSPISLLSTANQKWLQQPS
FSSHRRASNSKRRRSIIARNEAEMSRGVKVVAELERIRTILEEESGQVPSLRCWAEAAGV
DENVLRQNLHFGWFCRDELLRSTRSLVIFLTRNYRGLGIAHEDLIQAGNMGVLRGAERFD
HARGYRFSTYVQYWIRKSMSRMVAWHARGIRIPTTLATAVNQIQKARKSLNNRHRKYPDD
KEIAKLTGFSVAKVRSASQCLRVVGSIDQKMGDYSNAKYMEFTPDPSLRSPEETVIRQNM
RSQIQELLSGLDCRERQVLILRYGLKDNQVKSLEEIGRLFDVSKEWIRRIERKAMEKLRD
KELCSSLSHYLNI
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcaggctcaacctcaagtgcgtcgtccctgttcagtctcatctcctctccaac
tcgccgactcgactctctccctctgtcagaggcaaggaagcttcttttagctcaggaaga
ttgtcttctctgtccagtatagccgaggaggttgagccctgccataaatatcattcgaga
gcgtgcaaatgttcgtctgcatccactcctaccttggaagatgatctatccaaaatgacg
gatacgaaggtaatcattggcaagaggccattcagtagtataaacagtgatactggtgga
attcacatatcacacagggcaagcaactctaaaggcaacactagcttacaatcagtcaag
gcagcacattatagtttgttgatggaaaatcttaatgcattagaggatactcttacagat
tcagatgcgttaatattggagagagatattttgctacagttaggaagacttggagctcta
aagttatttcatgcctgtctgtcaaaagctttcgatggcccagatgcttgtgaagtatct
gatgctttggtggaaaagaagatgagcagtaaaagggacaatcatgtcaaaagaatcatt
cggtcagggaaaagagaaacgagaaaatcaagaagtgaaagaaaatcttcaaaacccaac
caaaattctcctatttcattgctttcaactgccaatcagaaatggctccaacaaccttca
ttttcatctcatagacgagcatcaaactccaagagaagaaggtcgataattgctaggaat
gaggccgaaatgtcaagaggagttaaggtggttgcagaattggagagaataagaacaatc
ttggaagaggaaagtgggcaggtgcccagcttgcgttgctgggcggaagctgctggagtg
gatgaaaatgtgctgcgtcagaacttgcattttggttggttttgcagggatgagcttttg
aggagcactcgctccttagttatatttcttacaaggaattacaggggtcttggtattgca
catgaagatttaattcaggcaggaaatatgggtgtgcttcgtggtgcagaaaggttcgac
cacgcaagaggctacagattttccacctatgttcagtactggatcagaaaatctatgtcc
agaatggtggcatggcatgctagagggatccgaattcctaccacattagccactgcagtg
aatcagatacagaaggctcggaaatctcttaataaccgccacagaaaatatcctgacgac
aaggagattgcaaagctcactggcttctctgtagctaaagtcagatcagccagccaatgc
ctgagagtcgtgggttcaatagatcaaaaaatgggagattacagcaatgcaaaatatatg
gaatttacacctgatccatctctgagaagccctgaggaaacggtcatacggcaaaacatg
aggagccaaattcaagaactcttgagtggcttggattgtagagagaggcaagttctcata
ctgagatatgggcttaaagataatcaggttaagtcactagaagaaatcgggagattattc
gatgtaagcaaggagtggataaggagaatagagcgaaaggccatggagaaactaagagac
aaagaactatgtagtagcctgagccactatctaaatatataa
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