Rhodamnia argentea (silver malletwood): 115741828
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Entry
115741828 CDS
T10595
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X2
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115741828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115741828
03012 Translation factors [BR:
rarg03012
]
115741828
Enzymes [BR:
rarg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115741828
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115741828
Translation factors [BR:
rarg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115741828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
Rad17
T2SSE
ATPase
Motif
Other DBs
NCBI-GeneID:
115741828
NCBI-ProteinID:
XP_030531691
UniProt:
A0A8B8PA92
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All DBs
Position
7:12530238..12539582
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AA seq
852 aa
AA seq
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MSSETQRLVGELLVSSAVSVGSSSFSSSQGDKQLLPAGNKEKSVSVLEIDSAKERLNAEL
KAKQEKMKDSADVKAMWSFREKLPAFKVKAEFLKAMANNQVLVVSGETGCGKTTQLPQFI
LEEEISSLRGADCSIICTQPRRISAISVAARISSERGEALGETVGYQIRLETKSSADTRL
LFCTTGVLLRRLAQDPKLTGVSHLLVDEIHERGINEDFLLIILRDLIPNRPDLRIILMSA
TINADLFSKYFGNAPTLHIPGLTFPVAELFLEDVLEKTHYNIKSEFDNFQGSSRRRRKQQ
DSKKDPVTELFEDVDIDSHYRSYSRSTRESLEAWSGSLIDLGLVESTLEYICHHEGDGAI
LVFLTGWDDISKLLDKVKVNHLLGDQSRILVLPLHGSMPTVNQREIFDRPPPGKRKIVLA
TNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASARQRRGRAGRVQPGV
CYRLYPRIVHDAMLQFQLPEILRTPLQELCLHIKSLQLGAIGSFLSKALQPPDHLAVQNA
IELLKTIGALDDKEDLTPLGRHLCTLHVDPNIGKMLLMGSIFQCLTPALIIAAALAYRDP
FVLPINRKEEADEAKRSFAGDSCSDHIALLKAFEGWKEAKRSAKERSFCWENYLSPVTLQ
MMDDMRMQFLNLLSDIGFVDKSKGPSAYNHYSNDLEMVSAILCAGLYPNVVQCKRRGKRT
AFYTKEVGKVDIHPASVNAGIHLFPLPYLIYSEKVKTTSIFIRDSTNISDYALLLFGGNL
VPSKSGEGIEMLDGYLHFSASKSVLELIRKLRGELDKLLNRKIEEPGLDISSEGKGVVAA
AVELLHSQNVHY
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagaaacccagagacttgttggagagcttttagttagttccgcggtatctgtt
ggcagctcctctttctcatctagtcagggagataaacaattattaccagctggaaataaa
gagaaatctgtctctgttttggagatcgattctgctaaggagagactaaatgctgaactt
aaggctaagcaagaaaagatgaaggatagcgccgatgtcaaggcaatgtggtctttccgg
gaaaaacttcctgcatttaaagtgaaagccgagttcctaaaagctatggcaaataatcag
gtactagtagtatctggagaaacaggttgtggtaagactacacagcttcctcaattcatt
ctagaagaggagatatcttctcttcgcggagccgactgcagcataatatgtacccaacca
cgtcgtatatctgccatatctgttgctgctcgaatatcttctgaaaggggagaggcactt
ggtgaaactgttggatatcagatccgtctggaaactaagtcttctgcagacacaaggctg
ctattttgcaccactggagtactacttaggcgactggctcaagacccgaaattgaccggt
gtaagccacttgcttgtggatgaaatacatgaaagaggcattaacgaagacttcctgttg
ataattctgcgtgatcttattccaaatcgtccagatttacggattattctgatgagtgca
accattaatgctgacttgttttccaaatattttggaaatgctcccactttgcatataccg
ggcttgactttccctgtggcagagttgttcctagaagatgtgttggagaaaactcattac
aatataaagtcagagtttgataactttcagggaagttcaagaaggaggaggaagcagcaa
gattcgaagaaagatcctgtgactgaactttttgaggatgttgacatcgattctcattat
agaagctacagcagatcaacaagagagtctcttgaagcttggtcaggttcactgattgat
ttgggtctggtggagtcaactcttgaatatatatgtcaccatgaaggtgatggagccatt
cttgtatttctcactggatgggatgacatttcaaagctgcttgacaaggttaaagttaac
catctgcttggggatcagagcaggattcttgttcttccgctacatggttccatgccgact
gtcaatcagcgggaaatatttgaccgtcccccaccaggtaagaggaagatcgtgctggca
acaaatattgcagagagcagtattacgatagatgatgttgtttatgttgttgattgcgga
aaggcaaaagaaactagttacgatgctctgaacaagctggcttgtcttttgccatcctgg
atttcaaaggcctcagcacgtcagaggagaggacgtgctggacgtgtgcaaccaggagtt
tgttataggctttatccaagaatcgttcatgatgcaatgctccagtttcaacttccggaa
attctccggactcctctacaagaactttgccttcacattaagagcttgcaacttggtgca
attggatcatttttgtccaaggcacttcagccacctgaccatcttgctgttcaaaatgct
attgaactgctaaaaacaataggggctctcgatgataaggaggatcttactccacttggc
cgccacctatgtactttacatgtggatccaaatatcgggaagatgcttttgatggggtcc
atatttcaatgtctgactcctgccctaatcatcgctgctgctcttgcataccgtgaccca
tttgtccttccaataaatagaaaagaggaagctgatgaagcaaaaagatcatttgccggt
gattcttgcagtgaccacatagcacttctgaaagctttcgaagggtggaaagaggcaaaa
cgaagtgcgaaggaaagatcattctgctgggaaaactacttgtccccagtgaccttgcag
atgatggatgacatgagaatgcagttcctaaatctcctttccgatattggctttgtagac
aaatcaaagggccctagtgcatacaatcattatagtaatgacttggagatggtatctgca
attctctgtgctgggctttacccaaatgttgttcaatgcaaaagaagaggaaagcggacg
gcattttacactaaagaagttggtaaagtggacattcacccagcatctgtcaatgcaggc
attcatctattccctttgccttacttgatatacagcgaaaaggtgaaaactaccagcatt
tttatccgggactccacgaatatatcagattatgctttacttctttttggcggaaacctt
gttcccagcaaaagtggggagggtattgaaatgcttgatggctaccttcacttctctgca
tcaaagagtgtgttggagttgatacggaaattgagaggagagctggacaagcttctgaat
aggaagattgaagaacctggcctggacatttccagtgagggaaaaggggtggtggcggct
gcagttgagttgcttcacagtcagaatgtacattactaa
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