Rhodamnia argentea (silver malletwood): 115742071
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Entry
115742071 CDS
T10595
Name
(RefSeq) small RNA degrading nuclease 1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
115742071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rarg03009
]
115742071
Ribosome biogenesis [BR:
rarg03009
]
Eukaryotic type
Pre-60S particles
RNases
115742071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DUF6898
HIP1_clath_bdg
Motif
Other DBs
NCBI-GeneID:
115742071
NCBI-ProteinID:
XP_030532024
UniProt:
A0A8B8PBJ1
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All DBs
Position
11:7413842..7420355
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AA seq
525 aa
AA seq
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MEGQLDVAEKKVLVEVVKLAQKRGMSGTKGVWKDFLNSYDKQLGASLSDPSRRSKEVLVA
FLKTFTDENDLKLFAKVIQCHSNRALTELFKEESPQLESPEQRLVCLTLEHPQYPLEYSF
PSYEEEWVVTKLKKKSKVMRSTDVVAVDCEMVLCEDGTEACVRVCVVDRSLKVKLNEFVN
PGKAIADYRTEITGIVAADLDVIKCSLSDVQKSMKKLLSHGTILVGHSLNSDLRALKLDH
ARVIDTSYIFKYPDACFQRKPSLNNLCKSVLGYEVREKGAPHNCVDDASAAMKLVLAVIE
RGCDTNILSLHDDVPNSEVAKLLLHRIPKIVPIGELHRAIPGEFTVEPKPSKNARGDTYS
ALAVFSSMEEAHRVYESLEGTLEKDSYGRSQKVVAFHLSTGTEANLCVRKAMHDNSLGQL
LKKRAAEMLDSGELKKMKASKIGEIEMAVANQCDDHLKEIERLKEELRQKDLQIVSRRED
HLQEIERLKHELSQKDLEISVLNKIVQQHKEKELQRKSKKFKIRI
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtcaactcgacgtcgcagagaaaaaagttcttgttgaagtcgtgaaactagcc
caaaagcggggtatgagcggtactaaaggagtgtggaaggattttttgaacagttatgac
aagcaattaggggcctctttgagcgatccctcgaggaggtccaaggaggtattggttgct
ttcttgaagactttcactgatgagaacgatttgaagctttttgcgaaagttattcaatgc
cattcgaaccgtgccctaacggagctattcaaagaggaatctccacagcttgagtcccca
gaacagagattagtttgtctcactctggaacatccacaatacccgttggaatattctttc
ccatcatatgaagaggaatgggtggttacaaagctcaagaaaaagtccaaggtgatgaga
tcaaccgatgtggttgctgtcgactgtgagatggtgctatgtgaagatggcactgaagct
tgtgtgagagtatgtgttgtggatcgcagtctgaaggtcaaacttaatgagtttgtgaat
cctggtaaagcaattgcagattacagaactgagattacaggaatcgttgcagcagatttg
gatgtaattaaatgctcattatcagatgtacagaaatctatgaagaagctattatcacat
ggaactattctagttggccacagtttgaacagtgacttgcgagcactgaagctggatcat
gcgagagtaattgatacctcatacatcttcaagtatcctgatgcatgttttcaaagaaag
ccatctttaaataatctgtgtaagtctgttctgggctatgaagttagagagaagggtgca
ccacataattgtgtagatgatgcttctgctgcaatgaagcttgttcttgctgttattgag
cgtggatgtgatacaaatattctgtctctccatgatgacgtacctaattccgaagtggca
aagctgctgcttcacaggatacctaaaattgtgcccataggagaattacatagagcaata
cctggggaatttacagttgaaccaaagccatctaagaatgctcgtggggatacatattca
gctttggccgtcttcagcagtatggaagaggcacatcgagtctatgaaagtttagagggc
actttggagaaggactcatatggacggtctcagaaagttgttgcatttcatctcagtacc
ggtactgaggctaatttatgtgtccgtaaagcaatgcacgacaactccctcggccagttg
ttaaagaagagagcagcagagatgttggactctggggaactgaaaaaaatgaaggcgagc
aagatcggagagattgagatggcagttgctaatcagtgcgatgatcacttgaaagagatc
gagagattgaaggaggagctgaggcaaaaggatcttcaaatagtaagtcgacgtgaagac
cacttgcaagagattgaaagattaaagcacgagttatcccaaaaggatcttgagatctct
gttctcaacaagattgtgcaacaacataaggaaaaagagctgcagagaaagtcaaagaag
ttcaaaatcaggatctga
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