Rhodamnia argentea (silver malletwood): 115742174
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Entry
115742174 CDS
T10595
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115742174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115742174
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
115742174
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Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40
Beta-prop_WDR5
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_EML
WDR55
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
DSE1_N
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
ASA1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_Aladin
CFAP251_N
Beta-prop_WDR41
Beta-prop_RIG_2nd
Beta-prop_NOL10_N
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_WDR75_1st
Beta-prop_SCAP
NBCH_WD40
WD40_RFWD3
PAC11
Beta-prop_Vps41
Tricorn_2nd
Beta-prop_DCAF12
WD40_like
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
115742174
NCBI-ProteinID:
XP_030532161
UniProt:
A0A8B8PBJ9
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Position
5:1304196..1312165
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AA seq
710 aa
AA seq
DB search
MMYGDPQQQQQQQQHPGGEFHRGPPPPPPPMMMRQPSASSTNLAPPDYQHHQPGPPPPHQ
AHPYDAHNDNFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQPTPAAAIDM
LPAVAYSDNPSTSFAAKFVHTSVNKNRCSINRVLWTPTGRRLITGSHSGEFTLWNGQSFN
FEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC
RTDLKFCSCSDDTTVKVWDFARCQEERSLSGHGWDVKSVDWHPTKSLLVSGGKDNLVKLW
DAKSGRELCSFHGHKNTVLCVKWNQNGNWVLTAAKDQIIKLYDIRAMKELESFRGHRKDV
TALAWHPFHEEYFVSGSFDGSIFHWLVGHETPQIEIPNAHDNSVWDLAWHPIGYLLCSGS
NDHTTKFWCRNRPGDTPRDKFNMGPNQAGYGEQNPALAGRMPGNFPVPETPTTPGPFGAG
LSRNDGTIPGVGVAMPLSIPSLDFSSQGEQKQPLPGSMPVGAPPLPPGPHPSLLAAHQQQ
PYPQNPQQIQQQQQHQPFPQQMAALPMPPPNMAQLQPPSHLPLLPHPHLPRPPPQMPPLN
MPSQGMQGTMNQMVPPMPQGHFMGMNPMHSGSLPSSGGPPVGGFPGNLPNMQGQTGGGGA
QMYPTGGPFNRPQGGQMPMMPGFNPFQPGNQSGMPPPPPPGPPPHGQAPQ
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacggcgatcctcagcagcagcagcagcagcagcagcacccaggtggcgagttc
caccgtggcccaccgccgccaccgcctccgatgatgatgaggcagccctccgcttcctcc
actaacctcgcccctccggattatcaacaccaccagcctggcccgcctcctccgcatcaa
gctcatccatatgacgctcataatgataattttgctgcgaaaagaatgagaaagcttaca
caaaggagggcagttgactacactagcactgttgttcggtatatgcagattcgtatgtgg
cagagggattctagagacaggacggtgttgcagcctacaccagctgcagccattgatatg
ttaccagctgttgcatattcggataatccttctacaagctttgctgcaaagtttgtgcat
acgtccgtaaacaagaaccgttgttcaatcaaccgagttttgtggactcctacggggcgg
cgtctcattacaggttctcatagcggcgaattcactctttggaatggacagtccttcaat
ttcgaaatgattcttcaggcacatgatcaagcaattaggtcaatggtgtggagccacaat
gacaattggatggtttccggtgatgatggaggagctataaagtattggcagaacaacatg
aacaatgtgaaggctaataaatctgctcataaagaatcagttcgagacttaagcttctgt
aggacagacttgaagttctgttcctgctctgatgatactactgttaaagtctgggacttc
gctcgatgccaagaagagcgttcgctatctggtcatggttgggatgtgaagagcgttgat
tggcaccctaccaaatcgttgttagtttcaggtggtaaggacaatcttgtaaaactatgg
gatgctaaatcaggaagggagctttgttcatttcatggccacaagaataccgtgctttgt
gtcaagtggaatcaaaatggaaactgggtgttaactgcggctaaggatcaaatcatcaag
ctctatgacatcagggctatgaaggagcttgaatccttccgcggtcatcggaaggatgtc
actgcattggcttggcatccattccatgaggagtactttgtcagcgggagcttcgatgga
tccatcttccattggcttgttgggcatgaaactcctcagattgaaatacccaacgcgcat
gataacagtgtatgggaccttgcatggcatcctattggctatttgctctgcagtggtagc
aatgatcatacgaccaagttttggtgcagaaataggccaggtgatactccacgtgataaa
tttaacatgggacccaaccaagcaggttatggtgaacaaaaccctgctcttgctggccgc
atgcctggcaatttccctgtacctgaaaccccaacaactccaggaccatttggtgcaggc
ttgtctcgaaatgatgggaccattccaggtgttggagttgccatgccgctgtcaattcca
tctttagatttttcttctcagggagagcagaagcagcctcttccaggttcaatgcctgta
ggagctcctcctctaccacctggtccacatccctcccttcttgctgctcatcagcagcaa
ccttatccacaaaatccgcagcaaatccagcaacagcaacaacatcagccattcccacag
caaatggctgccttgcctatgccacctccaaatatggcacagttacaacctccatcgcat
ttacctttgctccctcatcctcatctacctcgacctccgccccagatgcctccacttaat
atgccttcacagggcatgcaaggtacaatgaatcagatggttcctcccatgccacaaggc
cattttatgggcatgaacccaatgcactcgggatcgttgccctcaagtggtggacctcca
gttggtggttttcctggtaatttgccaaatatgcaaggacaaacgggtggaggtggggcc
caaatgtatccgacaggtggtccgtttaaccgtccacaaggtgggcaaatgcctatgatg
ccaggtttcaatccttttcagcctggaaatcaatctggtatgcctcccccgccaccaccc
ggtcctccaccacatggtcaagcacctcaatga
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