Rhodamnia argentea (silver malletwood): 115742331
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Entry
115742331 CDS
T10595
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
115742331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rarg04121
]
115742331
03036 Chromosome and associated proteins [BR:
rarg03036
]
115742331
Ubiquitin system [BR:
rarg04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
115742331
Chromosome and associated proteins [BR:
rarg03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
115742331
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_WDR41
Beta-prop_Aladin
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
EIF3I
WD40_RFWD3
MIOS_WD40
Beta-prop_Vps41
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
115742331
NCBI-ProteinID:
XP_030532415
UniProt:
A0A8B8PC75
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All DBs
Position
10:20039680..20043180
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AA seq
340 aa
AA seq
DB search
MENSTQESHHLRSENSVTHESPYPLYAMAVSSSPSRHHNHRIALGSFLEEYTNRVDVVSF
DPDSLSIKTHPGLSFDHPYPPTKLMFHPPSSNPSKSDLLASSGDYLRLWEVRENSIESVA
VLNNSKTSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKNAVETQLIAHDKEVYDI
AWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMD
SNKVVILDIRSPALPVAELERHRASVNAIAWAPHTCRHICSAGDDSQALIWELPTVAGPN
GIDPMSMYSAGSEINQLQWCAAQPDWIAISFSNKMQLLKV
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggagaactcgacccaagagtcccaccacctgagatccgagaactccgtgacccacgag
tccccctaccctctctacgccatggccgtctcctcctccccctcccgccaccacaaccac
cgcatcgccctcggaagcttcctcgaggagtacaccaaccgggtcgacgtcgtctccttc
gacccggactcgctctccatcaagacccacccgggcctctccttcgaccacccctacccg
cctaccaaactcatgttccaccccccttcgagcaacccctcgaaatcggacctcctggcc
tcctccggcgactatctccgcctctgggaggtccgagagaactcgatcgagtcggtcgcg
gtcctcaacaacagcaagacgagcgaattctgcgccccactgacgtcgttcgactggaac
gagattgagcccaagaggatcggcacctgcagcatcgacaccacatgcacgatctgggac
atcgagaagaacgcggtcgagacgcagctgatcgctcacgacaaggaggtttacgacatt
gcctggggcgaagctagggttttcgcttctgtttccgctgatgggtcggtgcggatcttc
gacttgagagacaaggagcattcgacgatcatttacgagagccctcaacccgatactccg
ttgctcagactggcttggaacaagcaggacttgagatacatggccactattttgatggac
agcaataaagttgtgatcttggacataaggtcgccggcgttgccagtcgcagagctcgag
cggcatcgggcaagcgttaatgcaattgcgtgggctccacatacttgtaggcacatttgt
tcggccggggatgactctcaggcgctcatttgggagttgcccaccgttgctggtcccaat
gggattgacccgatgtcgatgtattctgctgggtccgagataaaccagttgcagtggtgt
gcagcgcagccggattggattgctatctcgttttcaaacaagatgcagcttttgaaagtt
tga
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