Rhodamnia argentea (silver malletwood): 115742395
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Entry
115742395 CDS
T10595
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4 isoform X2
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03018
RNA degradation
rarg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115742395
09123 Folding, sorting and degradation
03018 RNA degradation
115742395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115742395
03041 Spliceosome [BR:
rarg03041
]
115742395
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115742395
mRNA degradation factors
5'-3' decay
Lsm complex
115742395
Spliceosome [BR:
rarg03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
115742395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
115742395
NCBI-ProteinID:
XP_030532516
UniProt:
A0A8B8PD67
LinkDB
All DBs
Position
7:complement(26224233..26227041)
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AA seq
150 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRGREDGPGGRPAKGIGRGLED
GGSKGAGGGRGKGGPGGKGSGNRGGGRGRG
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttctttactcaagactgcgcaaggccaccccatgttggtggaactgaag
aatggagaaacttacaatggacatctggtcaactgtgatacatggatgaacatccatctc
cgtgaagtcatttgtacctccaaagatggagataggttttggcgcatgcctgagtgctat
atccgtggaaatacaattaaatatctccgagttccggatgaggtaattgataaagtgcag
gaagaaaccaagagtcgctcagatagaaagccacctggtgttgggcgtggaagaggaaga
ggcagagaggacggtcctggtggaaggccagctaaaggaattgggcgtgggctcgaggat
gggggcagcaagggtgctggcggaggccgaggcaaaggcggacctggtgggaagggaagt
ggaaacagaggtggagggcgaggccgtggctga
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