Rhodamnia argentea (silver malletwood): 115742402
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Entry
115742402 CDS
T10595
Name
(RefSeq) DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
115742402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rarg03400
]
115742402
DNA repair and recombination proteins [BR:
rarg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
115742402
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
YL1
nSTAND_NTPase5
ResT-TelK_cat
TetR_C_5-like
Motif
Other DBs
NCBI-GeneID:
115742402
NCBI-ProteinID:
XP_030532528
UniProt:
A0A8B8PEP0
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Position
7:25788288..25798916
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AA seq
1304 aa
AA seq
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MAPTRRQSNGRSPLVNKQFQITSFFSTKPGSSTPSPLQNPNSTLGPNPNPRDPSDPDDSP
SPSPSPSPATPSPVQFNHRKKTPLVIPSAPATPKPYGREVLSKRVRVYWPLDKAWYEGCV
KSFDEGSGKHLVQYDDAEEELLDLGKEKIEWVKENAKKLKRLRRGGGTVSEKVVEDVESD
EGGKDWEDDTSDEDWGKSAEKKMVEDTEDEDMEAGFTDEEEAGEKSSGGKSHSRKRKVSE
GSESMSAKKNKSSSGVCNDGSKVSVVVSGNKFTSCSTIAQKTTNGLSSSLPTDASERFSI
RESEKLHFLGQERRDAKRRQPGDTDFDPRTLYLPPDFLKSLSGGQRQWWEFKSKHMDKVL
FFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPEKNFSMNVEKLARKGYRVLVVEQ
TETPEQLELRRKEKGSKDKVVKREICAVITKGTLTDGEMLSANPEGSYLMAVTESCQILA
DQKAERTLGVCLVDAATSRITLGQFRDDSECSALCCLLSELRPVEIVKPTKGLSAATERV
LLTHTRNPLVNELVPVLEFWDAEKTVHELRTIYKSISARSSSASSDETDIETAACHLKDD
DLDNLPEFLSELVNSGENRNLSLSALGGAIYYLKQAFLDETLLKFAKFESLSCSGFGDVA
QKHMILDAAALENLEVFENGRNGGSSGTLYAQLDHCVTAFGKRLLKTWLARPLYHQEAIK
ERQDAIADLKGENQPFTLDFRKVLLRLPDMERLLARVFSSSEACGRNANKVILYEDAAKK
QLQEFISALRGCELLVEGLSSLGVILENVESRQLVHLLTPGKGLPEVSSILKQFKDAFHW
VEASNSGRIIPREGVDMEYDSACNKIKEIESNLMKHLKKQRKLLGETSITYVNIGKEAYL
LEVPESLRGKVPHDYELRSSKKGFFRYWTPKIKKLVSELSQAESEKESALKSILHRLIRR
FCEHQDKWRQLISSTAEIDVLISLAIASDYYEGPACRPVFKVSSDSSKEPCLSAKGLGHP
ILRSDSLGKGTFVPNDVNVGGSANASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPA
ESFQLSPVDRIFVRMGAKDHIMAGQSTFLTELSETASMLSSATHNSLVALDELGRGTSTS
DGQAIAESVLDHFVHKVHCLGMFSTHYHHLAVNYRNDPGVSLCHMACQVGDGTDGIEEVT
FLYRLTPGPCPKSYGVNVARLAGLPESILQKAASRSREFEHSYGRHKKGSPKHSCTQFSE
EMALFMQKLMKLVMQSSDSELFDTTCIDSFVKLQHEAKLLVRQQ
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggccccaactcgccgccagagcaatggcagatcgccgctcgtcaacaagcagttccag
atcacttccttcttctccaccaaacccggctcctccactccctctcctctccagaacccc
aattccactctcggccccaaccctaaccctcgcgacccctccgatcccgacgacagcccc
agccccagccccagccccagccctgccactccttcccctgttcaattcaatcatcggaag
aagacgcctctcgtcatcccctcggcccccgccactccgaagccctacggccgagaagtc
ctgagcaaaagggtcagggtgtactggccgctggacaaggcctggtacgagggctgcgtc
aagtcgttcgacgaggggagcggcaagcacctggtccagtacgacgatgccgaggaggag
ttgctggatttggggaaggagaagattgagtgggttaaagagaatgcgaagaagttgaag
cggttacggcgtgggggtggtacggtctcggagaaggtagtggaggatgtggaaagtgat
gagggcggtaaagattgggaggatgatacgagcgatgaagattggggaaaaagcgcggag
aaaaagatggtggaggatactgaggacgaggatatggaggcggggttcaccgacgaggag
gaagcgggtgaaaagagcagtggtggtaagtcccactcgaggaagaggaaggtcagtgaa
ggaagcgagtcaatgtctgctaagaagaacaagagcagtagtggtgtttgcaatgacggg
tcgaaagtctcggtggtggtttcagggaataagtttacttcatgctctaccatagcccag
aaaaccactaatggtctcagttcttccttgccaactgatgcttcagaaaggtttagtatc
cgggaatctgaaaagctgcactttcttggacaagaacggagggacgcaaaaagaagacaa
ccgggggatacagattttgatcctaggactctttatttacctcctgatttcctcaagagt
ttatcaggtggccagaggcaatggtgggagtttaagtcaaagcatatggacaaagtctta
tttttcaagatgggaaaattttatgaacttttcgaaatggatgcacatgttggagcaaag
gagcttgatttacagtacatgaagggcgagcaaccgcactgtgggtttccagaaaagaac
ttctcaatgaatgtggagaaattggccagaaagggttatcgagttcttgttgtcgagcag
acggaaacacctgaacaacttgagcttcgccggaaggaaaaaggttcaaaagataaggtt
gtgaaacgtgaaatatgtgcagtgatcacaaaaggaactctgactgatggagaaatgctt
tctgcaaatcctgaaggttcttacctgatggcagtgactgaaagctgtcaaattcttgca
gaccaaaaggcagagcggactcttggcgtgtgtttggtggatgctgctactagcaggatt
actcttggtcagttcagagatgattcagagtgcagtgctttatgctgtctgctatctgaa
ctacgcccagtagaaattgttaaacccactaaagggttaagtgctgcaactgagagggtt
ttgcttactcatacacgaaatcctttggtgaatgaactggttccagtcttagaattttgg
gatgcagagaagactgttcatgaactaaggaccatttataagagtatcagtgctcgatca
tcgtccgcaagttcagatgaaacagatattgagactgctgcttgtcatttgaaagatgat
gacttggataacctcccagaatttttgtctgagttggtgaattctggtgagaatcggaat
ctttctttgtcagcccttggaggtgccatttattatctgaaacaagctttcctggatgag
acattgcttaaatttgcaaaatttgagtcactttcatgttctggattcggtgatgttgct
caaaagcatatgattcttgatgctgctgcattggagaaccttgaggtttttgagaatggc
agaaatggagggtcttcagggacactttatgcacaactggaccactgtgtgaccgcattt
gggaagaggcttcttaaaacatggctagcaagacctttatatcatcaggaagcaattaaa
gagcgccaagatgccatagcagatcttaagggagaaaatcaacccttcacattggatttt
cggaaagtgttgttgaggcttccagacatggagcgcttgcttgcacgcgttttctctagc
agtgaagcttgtggaagaaatgcaaataaagtaatcctctatgaagatgcagcaaaaaaa
cagctgcaagaatttatatctgctttacgtggctgtgaattattggtcgagggactttct
tctcttggtgttatattggagaacgttgagtcaagacaactggttcatttgttaacacct
gggaagggtctcccggaggtcagttcaattctgaagcaatttaaggatgcctttcattgg
gttgaagccagtaattcagggcgaatcatacctcgtgaaggagttgatatggaatatgac
tctgcctgtaataaaatcaaggaaattgagtctaatttgatgaaacacctcaagaagcaa
aggaaattacttggggagacttcaataacttatgtcaatattgggaaagaggcataccta
cttgaagtgcctgaaagtttacgtggaaaagttcctcatgattatgaactgcgttcatct
aagaagggtttctttagatattggacccccaaaattaagaagcttgtaagcgagctctca
caagctgaatctgaaaaggagtctgcgctgaagagtattttgcatagactaattagacgc
ttctgtgagcatcaagacaagtggaggcaactaatttcttcaactgcagagatcgatgtt
ctgatcagcttggcaattgcgagtgactattatgaaggaccagcatgtcgtccggttttc
aaagtctcttctgattcgagtaaagagccatgcttgtctgccaagggcctagggcatcct
atccttagaagtgattccttgggcaaaggtacctttgtccccaatgacgtcaatgttggt
ggttccgctaatgctagctttatccttctcactggtcctaacatgggtggaaaatcaacc
ttgctccgacaagtttgcttggctgtaattttggcacagattggagcagatgtacctgct
gagagttttcaattgtcgcctgtggatcgaatttttgtccgcatgggtgccaaggatcat
attatggcagggcaaagtacatttttaactgagctctccgaaactgcatcaatgttgtca
tcggcaactcacaattctttggtggcattggatgaactgggacgcgggacctcgacctca
gatggacaggccattgcggaatctgtcttggaccatttcgtccacaaagtgcactgccta
ggaatgttttctactcattatcaccatttagctgtgaactataggaatgatcctggggtt
tcactttgtcatatggcatgccaagtgggagatggaactgatggcatagaggaggtcaca
tttctttatagattgacgcctggtccatgccccaaaagctatggagtcaatgttgcacgc
ttagctggacttcctgaatccatccttcaaaaagcagcttcacgatcaagagaatttgag
cattcgtacggtaggcacaaaaagggatctccaaagcattcgtgcacccaattttcagag
gagatggcgctctttatgcagaaattgatgaaacttgtcatgcaatcgagtgactctgaa
ttattcgataccacgtgcattgattccttcgtcaaactgcaacacgaggcaaaattactc
gtacggcaacagtga
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