Rhodamnia argentea (silver malletwood): 115742668
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Entry
115742668 CDS
T10595
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115742668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115742668
03012 Translation factors [BR:
rarg03012
]
115742668
Enzymes [BR:
rarg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115742668
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115742668
Translation factors [BR:
rarg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115742668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
Dicer_dimer
AAA_19
nSTAND3
AAA_16
NACHT
T2SSE
AAA_30
NPHP3_N
ATPase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
115742668
NCBI-ProteinID:
XP_030532970
UniProt:
A0A8B8PDT3
LinkDB
All DBs
Position
6:complement(6161123..6172133)
Genome browser
AA seq
1192 aa
AA seq
DB search
MAYSAIFHGCLRATMSARPARVQFRRTYRASVALPSASPVALRTGAAPLRSVLAPTLLGR
RMVACLAVEVDRRGRSGVASPFLHRQSSSYGRFDYQDVSSDESDLEVGSSQQRQMHASTL
DNVEEWKWKLTMLLRNKEEQEMVSRERKDRRDFEQLSALATRMGLYSHQYSKVVVFSKAP
LPNYRSDLDDRRPQREVALPYRLQMEVDKHLQAYLSRKPKNRDKLLYSPKSEHGVDGSIA
VDDLYDEQERITPNNVVVEKIQRRRSLQLRNKQQDWQECPEGQRMLEFRQGLPAYKERDA
LLKAVSENQVVVVSGETGCGKTTQLPQYILESEIEAARGAVCSIICTQPRRISAMAVSER
VASERGEQLGDSVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRKLTGVTHVIVDEIHE
RGMNEDFLLIVLKDLLRRRPELRLILMSATLNAELFSNYFGGAPMIHIPGFTYPVRAHFL
ENILEVTGYRLTPHNQIDDYGQDKSWKMQRQAVKKRKSQIATAVEDALESADFRGYGRWT
RESLSCWNPDSIGFNLIEHVLCHIIQKERPGAVLVFMTGWDDINSLKDQLQSHPLLGDPS
RVLLLACHGSMASSEQRLIFDKPPDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSY
DALNNTPCLLPSWISKAAARQRRGRAGRVQSGECYHLYPRCVYDAFADYQLPELLRTPLQ
SLCLQIKSLQLGSIAEFLSRALQPPESLSVQNAVEYLKVIGALDENENLTVLGRQLSMLP
VEPKLGKMLILGAIFNCLDPVMSIVAGLSVRDPFLMPFDKKDLAESAKAQFSGHDYSDHL
ALARAYDGWRDAERQQAGYEYCWRNFLSAQTMKAIGSLRKQFFSLLKDIGIVDQNTELSN
SWSHDEHLIRAIICAGLFPGISSVVNKDKSISLKTMEDGQVLLHSNSVNAGVPKIPYPWL
VFNEKVKVNSVFLRDSTGISDSVLLLFGGNISRGGLDGHLKMLGGYLEFFMESSLAETYL
SLKRELGELVQNKLLNPKFDMQSFHDLLMAVRLLVSEDQCEGRFVFGRQLPKKVTKVTLQ
AASSKGANGATGDNSKNQLQTLLVRAGHEAPTYKTKQVKNNQFRSTAIFNGLDFTGRPCS
NKKLAEKDAAAQALLWLRGETQLSSSDMDAVSTLLKKKKVKNQRTARSSRWS
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcggccattttccatggttgcctgagggcgacgatgtccgcgaggccggca
cgtgtccagtttcgcagaacttacagggcctccgtggcgcttccttcggcttcacccgtt
gcattgaggactggagcggcgccgcttaggtcggtgctcgcgccgactcttttggggcga
cggatggtcgcgtgcttggccgtggaggtggaccggagggggaggagcggcgtagcgtcg
ccgtttctgcaccggcagagctcgagctacggacggtttgattatcaggacgtgtccagc
gacgagtcggaccttgaagtcggttcatctcagcagcggcagatgcacgcatcaaccctt
gacaatgtggaagagtggaagtggaagttgaccatgcttcttcgcaataaagaggagcag
gagatggtatctagggagaggaaagacagacgtgactttgaacaactttcagccctggca
accaggatgggtttgtatagccatcaatattcaaaagtagttgtctttagcaaagcccct
ctgcccaattacagatctgatcttgatgacaggcgtccacagagagaggtggcattacct
tatagattgcaaatggaagtggataagcacctccaagcatacctttcccgaaagcccaaa
aatagggacaagttgttgtattctccaaaatcagagcatggtgttgatggaagtattgct
gtcgatgatctttatgacgagcaggagcgtattacaccaaacaacgtagttgtagagaaa
attcaacgccggagaagtttacaattgcgtaataaacagcaagattggcaggaatgtcct
gaaggccaaaggatgcttgaatttcgccaaggtctccctgcatacaaagagagggatgcc
ttgctaaaagccgtttcagaaaatcaggtggtggttgtctctggtgaaactggatgtggt
aaaacaactcaacttcctcaatacatacttgaatctgagattgaagctgctcgaggggct
gtatgtagtataatttgcactcagccaagaagaatttctgctatggctgtttccgaaagg
gttgcttcagagcgaggagagcaactgggtgactctgttgggtataaggttcggttggag
gggatgaaagggagggatactcgcttacttttttgcaccacgggcatattgttaaggaga
ttacttgttgacagaaaattgactggtgtaactcatgttattgttgatgagattcatgag
cgtggtatgaacgaagatttccttctcattgtgctcaaagatcttctgcgtcgccgacct
gaattgaggctgattttgatgagtgcaaccctcaatgccgagcttttttctaattacttt
ggtggtgcaccgatgatccacatacctggtttcacatacccagtccgagctcattttttg
gagaatattttggaggtgactggatatagattgactccacataatcagattgatgattat
ggtcaagacaaaagttggaaaatgcagagacaagctgttaaaaagaggaagagccaaatt
gctactgctgttgaggatgcacttgaatcggcagacttcagagggtacggtcggtggaca
cgcgaatctctgtcctgttggaaccccgattccattggctttaatctcattgagcatgtg
ctttgccacataattcaaaaggaaaggcctggagctgtattggtttttatgactggttgg
gatgacataaactccttaaaggatcagctgcaatcccatcctctcttgggtgatccgagc
agagttctgttgcttgcctgtcatgggtccatggccagctcggagcagaggttgatattt
gataagcctccagatggagttaggaaaatagtcctagctaccaatatggctgagactagt
atcaccatcaatgatgtagtctttgtggttgactgtggaaaggcaaaagagacttcctac
gatgcgcttaataacactccttgtctgcttccatcttggatctcaaaggctgctgctcga
caaagaagaggaagagctggtcgtgttcaatcaggagaatgttaccacctctatcctaga
tgcgtttatgatgcttttgctgactaccagttgccagaacttctgaggacaccgttgcag
tccttatgtctgcaaataaaaagtctgcaacttggaagcatcgcggaattcctgtctagg
gcattgcaaccgccggaatcactttcggtccaaaatgctgtggaatatctgaaggtgatt
ggagctttagatgaaaatgagaatttgacagtgttaggtcgccagctttcaatgcttcca
gttgagcccaaactggggaagatgcttatactgggggccattttcaattgtctagaccca
gtaatgtcaattgttgctggtctcagtgttagagatccattcttgatgccatttgacaag
aaggatcttgcagagtctgcaaaagcccaattttctggccatgactacagtgaccatctt
gcacttgctcgagcctatgatggttggagagatgctgaaagacaacaggctggctatgaa
tactgttggcgaaattttctgtctgcacaaactatgaaggcaataggctctcttaggaag
caattcttttctttactcaaggatattggcattgttgatcaaaatacggagctttctaat
tcgtggagccatgatgagcatcttattcgggcgattatttgtgccggtttgttcccagga
atatcttctgttgtgaacaaagacaagtcaatttccttgaagacaatggaggatggtcag
gtgctcctgcactctaattctgtgaatgctggagtcccaaagattccatacccatggttg
gttttcaatgagaaggtgaaggttaattcagtcttccttcgggattcgacgggtatttct
gactctgtgcttctcttatttggaggaaacatttcaaggggtggacttgatggtcaccta
aagatgttgggaggatatttggagtttttcatggaatcttcgttggccgagacatattta
agcctaaaaagagagcttggggagctcgtccagaataagcttctgaatcccaaattcgat
atgcaatccttccatgatcttctaatggcagtaaggttgctggtctcagaagaccaatgt
gaaggtagatttgtctttggtcgtcagctgcctaaaaaagttacaaaagtaacgttacag
gccgcatcatcaaaaggtgcaaatggagccactggtgataattcgaagaaccaattgcag
actctacttgttagggcaggacatgaagcaccaacctacaagacaaaacaagtgaaaaac
aatcagttccgttcgactgcgatcttcaacggattggatttcacgggaaggccttgcagc
aataagaagcttgcggaaaaggatgcggctgcccaggcgttgctatggttaaggggtgag
actcaattatcctcttctgatatggatgctgtgtctacacttctaaagaagaagaaagtc
aagaatcagaggacagcacgcagcagtaggtggagttaa
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