Rhodamnia argentea (silver malletwood): 115742855
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Entry
115742855 CDS
T10595
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115742855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rarg03021
]
115742855
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115742855
Transcription machinery [BR:
rarg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115742855
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115742855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf_UBZ
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
115742855
NCBI-ProteinID:
XP_030533223
UniProt:
A0A8B8PGI0
LinkDB
All DBs
Position
9:complement(24715672..24721464)
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AA seq
984 aa
AA seq
DB search
MDTERITPISRENPRSFPFKPMPNDLVPKPLPPPTVVDRFRALLKQRDDEFRVSADDGAS
PPPPPSTGEVVAVYESVLSELIFNSKPIITDLTIIAGEQREHAEGIADAICSRIIEVPVE
QKLPSLYLLDSIVKNIGKEYVRHFAPRLPEVFCEAYRQVDPSQYGAMRHLFGTWSSVFPP
MVLRKIESELQFSSSASNHRSGLSSSRASESPRPAHGIHVNPKYVRQLEHPSAESVGGEA
TRLRSTENIIRSSYPPRANKLHPSPNAAFTKTLSPLRRGTDMTFSAETDEFTPDSTLRKY
DRASPSHTASEYDLARAVGREEQSTDWQRNHFFDVGRKRLGSSAAINLTNGRNHMNPRAL
IDAYGDDKRKTTSISKPNQIEHSDIRGKVAPMSWQDTEEQEFNWEDMNRSLVDRGRSNDI
VQSSVQPYGGSIARLGGRFSSLPPAPARDDPSIYCGDASIMSGPGSADKMTGLQGETNKI
ASSRYSQKPLNLSTHTSQQFFNRGRVSNLQTVSSAGGMQVGDEKRIPGYRKLPVAKQVDR
TIPPRMDSSTFESTYAANLPTSTGTWPATNVHKSNSLPVRAVLPLQKQSTGPVIISGPST
VANQGANHPLLMVEQKLDKFDGKELLPTTKLSLLNQHGGFMPQNQQKNQVRSTPFQPQFL
PIQEDQEKVLPSSAAIVSSQMIAPGLNYGFPGQGQRPILSSVQANMLQIAQSSLPIQNIP
NNMMHFPGGSLPPLPPGPPPVLSQSLPMSQIPTAGLPNNLGGSGYTGLISSLMAQGLISL
TNQTPVQDSVGVDFNMDLLKVRHDSAIRALYDDLPRQCTTCGLRFKFQEEHSSHMDWHVT
KNRMSKNRKQKPSRKWFVSTSMWLSGAEALGAEAVPGFLPAESTEEKKSDEEMAVPADED
QNACALCGEPFDDFYSDETEEWMYKGAVYMNAPDGSTAGIDRSQLGPIVHAKCRSESSEV
SPGNFSKDEGGTAEEGSQRKRLRS
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgagagaatcaccccaatctcgcgagaaaaccctaggagcttccccttcaag
cccatgcccaatgacctcgtcccgaagccgctgcccccgccgacggtcgtggatcggttc
agggccttgctgaagcagcgggacgatgaattcagggtctcggccgacgatggagcgtcg
ccgccgccgccgcccagcaccggggaggtcgtggcggtctacgagtcggtcttgtcggaa
ttgatattcaattcgaagccaatcattaccgatctgacgattatagccggagagcagcgg
gagcacgccgagggcattgctgatgcgatctgttctcggattattgaggtccctgttgag
caaaaattaccatcactatatctactggatagcattgttaagaatattgggaaagaatat
gttaggcactttgcgccccggctacctgaggtcttctgcgaagcttatagacaagtcgac
cctagccaatatggggccatgcgccatctatttggcacatggtcatctgtttttccacca
atggtccttcgcaaaattgagtcggaactgcaattttcttcttcagctagtaatcatcgg
tctggcttgtcttcctcgagggcttcagaatctcctcgaccagctcatggcattcatgtc
aatccaaagtacgtgcgtcagttggaacatccatctgctgaaagtgttggaggtgaagct
actaggttgaggtcgacagaaaacattattcgttcatcctatccccccagggcgaataag
cttcatccatctcccaatgctgcttttacaaagaccttgtctcctctgagaagaggaact
gatatgactttctctgcagaaacagatgaatttacacctgatagcacattgaggaaatat
gatagggcatctccatctcacactgcctctgaatatgaccttgcaagagcggtaggtaga
gaggagcagtcaactgattggcaaaggaatcacttttttgatgttggtcgaaagcgtttg
ggaagttctgctgcaatcaacctcaccaatggacgcaatcatatgaatcctagagcattg
attgatgcatatggagatgacaagaggaaaactacctccatctctaagcccaaccaaatt
gagcactcggacatcagaggaaaggtggctcccatgtcatggcaagatacagaagagcag
gagttcaattgggaagatatgaatcgcagtttggtagatcgtggtagaagtaacgatata
gtgcaatcatctgttcaaccttatggcgggtcaatagctaggttgggaggcaggttttct
agtctgcctcctgcaccagcacgagatgatccctctatttattgtggagatgcttctatt
atgtccggtcctggatcagctgataaaatgactggacttcaaggcgagacaaataaaatt
gctagttcccgctattctcagaaaccattaaatttgtcaacacacacttcccaacaattc
tttaataggggaagagtttccaatttacagacagtgtcttcagctggaggcatgcaagta
ggtgatgagaaacggattcctggttacagaaagcttcccgttgctaaacaagttgacagg
actatcccaccaaggatggattcttccacttttgaatccacttatgctgccaatctcccc
acatcaactggcacttggcctgcaactaatgtgcataagtctaactcccttcccgttcgg
gctgtacttcccctgcaaaagcagtctactggcccggtcattatttcaggtcctagtact
gttgcaaatcaaggtgcaaaccaccctctgcttatggttgaacagaaacttgataagttt
gatggcaaggagctacttcctactacgaagttatcattactcaatcagcatggtgggttc
atgccacagaatcagcaaaagaaccaagtgcgaagtactccatttcaacctcagtttctc
cccattcaggaggatcaagaaaaagttctcccatcttctgcagcaattgtgtcatctcaa
atgatagcacctggattaaattatggatttccaggacaaggtcaacgtccaattttatcc
tcagtgcaagcaaatatgttgcaaatagcgcaatcttctttaccaatccaaaacatccca
aacaacatgatgcattttccgggtggatccttgcctcccctgcctccaggtcctcctccc
gtcctgtcgcagtcattaccaatgtcacaaattcccactgcaggtctacctaataattta
ggcggaagtggatacactggtttaatcagttctctcatggctcaagggttgatctcacta
acgaatcagacccctgtacaggattctgttggcgttgattttaacatggaccttcttaaa
gttcgtcatgattctgcaataagagccctgtatgatgatctcccaagacaatgtacaaca
tgtggcttgaggtttaagtttcaagaagagcacagtagccatatggactggcatgtgacc
aagaaccgaatgtctaagaatcgcaagcagaaaccttcacggaaatggtttgtaagtacg
agcatgtggctcagtggtgcggaggcattgggagctgaggcagttcctgggtttttgcct
gctgagagcactgaagaaaagaagagcgacgaagaaatggcagttcctgctgatgaagat
caaaatgcatgtgcattgtgtggggaaccttttgatgatttctatagcgatgagacagaa
gaatggatgtataaaggagctgtatacatgaatgcacctgatggttcgactgctggaatt
gataggtctcagttaggtccaattgtacatgctaaatgccggtcagaatctagtgaagta
tcccctggaaatttttccaaagatgaagggggaactgccgaagagggtagtcaaagaaaa
cgattgcggagttaa
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