Rhodamnia argentea (silver malletwood): 115744026
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Entry
115744026 CDS
T10595
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03013
Nucleocytoplasmic transport
rarg03015
mRNA surveillance pathway
rarg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115744026
09122 Translation
03013 Nucleocytoplasmic transport
115744026
03015 mRNA surveillance pathway
115744026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115744026
03041 Spliceosome [BR:
rarg03041
]
115744026
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115744026
Spliceosome [BR:
rarg03041
]
Complex C
Other components
EJC/TREX
115744026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
115744026
NCBI-ProteinID:
XP_030534959
UniProt:
A0A8B8PJR8
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Position
11:complement(2946028..2951650)
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AA seq
679 aa
AA seq
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MSSYPILGNRPIDQWKVTELKEELKRRKLTTRGLKDDLVKRLAEAVNIERENAEKEKQVE
TEFTCDPQLETIAEDGTDPVAFQSAKSADDGDKNNDELVFNYGDDRNRREVDAKVQIDIN
DSSPVLDQPAPEGEGTDVGQLGKGEEELVVPTMVEVPITVTRMPDVTSSDQDLQNLETKE
ENRISKMELENEHLKPLQEDVVLDSPAPNNQVSEVSASLGFQVRSDSISADSVSINEKNE
SKDNIIADNVKLELDVKPEMVEVEPSSSNVVPVGGESHLMDVEEPPENKLAVEVKEDNDA
ANADMNKLNEISDVGDSEKLNLDRSSGDDSLDEDVLDSKHVESKPVSDEVGGGSEKKEVT
PVKEESPVDIMGDADPKDVSVERNGQPLLAEKRKILDQGGNGSTDPAKRQRRWKSESVKD
VELQRSNVTPVTTPRDGAQTPSFRPTFSRTNSAVSDDTPKERTVPPPQKPPTTSLRIDRF
LRPFTLKAVQELLGKTGSVTSFWMDQIKTHCYVMYSSVEEAIETRNAVYNLQWPPNGGRQ
LVAEFVDPQEVKARLEAPPTPTPAPPPDSAPTAPLNIGPSTVAPPTVQPQPSPRQLPLRQ
QQLPPPPPLPHPQAKASQERDRLPLPPPPPPLSEKVDPTIVTLDVLFKKTKASPRIYYLP
LSEDQVAAKLAAQRRTGRQ
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatatccgattctcggcaaccggcctattgaccagtggaaggttacagagttg
aaggaagagcttaagagacggaagttgactacaagaggtctgaaggatgatttggtgaag
cgcttggctgaagcagttaatattgaaagggaaaatgctgaaaaagagaagcaagtggaa
actgaatttacgtgtgatccacagcttgaaactattgctgaagatggaacagatcctgtt
gcatttcaaagtgcaaaaagtgcggatgatggtgataaaaataatgatgagttggttttt
aactatggtgatgatagaaatcggagagaggttgatgctaaagttcagattgatatcaat
gacagttctccggtcctagatcaacctgctccagaaggggaaggtacagatgttggtcag
ttgggaaaaggggaggaggagctggttgttcctactatggtcgaagttccaatcactgtg
acccgtatgcccgatgtgacatcaagtgaccaagatctgcaaaatcttgagacaaaggag
gagaacagaatttcaaagatggagctggagaatgagcatttgaagcctctgcaagaggat
gtcgtccttgattcacctgccccaaataaccaggtatctgaggtcagcgcttctttaggg
tttcaagtaagatctgattctatttctgctgattctgtgtcaattaatgaaaagaatgaa
tctaaggataatataattgctgataatgtaaaattagagctagatgttaagccggagatg
gtggaagtggaaccatcatccagcaatgtcgtcccagttggtggcgaatcacatcttatg
gatgttgaagagccacctgagaacaagttagctgttgaggttaaagaagacaatgatgct
gcaaatgcagacatgaacaaactcaatgagatttcggatgtgggggactcggaaaagtta
aatttagatcgaagttcaggtgatgattcactggatgaagatgtgttggatagtaagcac
gttgagtcgaagcctgtctctgatgaagttggaggtggaagtgagaaaaaggaagtcacg
cctgttaaggaggaaagccctgttgatatcatgggtgatgctgacccaaaggatgtcagt
gtggagagaaatggtcagcctttgcttgcagagaaaagaaagattctcgatcaaggaggc
aatggaagtactgatcctgcaaagaggcagcgtaggtggaaatctgagagcgtcaaagat
gttgaactgcagcgctcaaatgttacacctgtaacaacacctagggatggagcccagacc
ccttcttttaggcctaccttctctagaactaactctgcagttagtgatgacacgcctaag
gaacgtacagttccaccaccacaaaaacctccaactacttccctaagaatcgatcggttt
ttgcgtccctttaccctgaaagctgtccaagaacttttaggaaaaactggttcagttacc
agcttctggatggaccagattaagacccactgctacgttatgtattcatctgttgaagaa
gccattgagacgcgaaatgctgtgtataaccttcaatggcccccaaatggtggacgccaa
cttgtggccgagtttgttgaccctcaagaagtaaaagcacggctggaggctcctccaact
ccaacaccagcacctccaccggattcagctccgaccgcacctcttaatatcggtccgtct
actgttgctccaccgacggtgcagccccagccttctccccgccaactgcctcttaggcag
cagcagttgcctccaccaccacctcttccgcacccacaagcaaaggcttcacaagaaagg
gatcggctcccgctcccacccccaccacctccactttccgagaaagtcgaccctaccatc
gtcactctggatgttctcttcaagaagaccaaagcctctccccggatttactacttgcca
ttgtccgaggatcaggttgcagccaaattagcggcacagaggagaaccggcaggcagtag
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