Rhodamnia argentea (silver malletwood): 115744366
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Entry
115744366 CDS
T10595
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
rarg Rhodamnia argentea (silver malletwood)
Brite
Chromosome and associated proteins [BR:
rarg03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
115744366
microRNA pathway
RISC loading complex
115744366
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NCBI-GeneID:
115744366
NCBI-ProteinID:
XP_030535345
UniProt:
A0A8B8PKL2
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Position
9:complement(8325225..8343147)
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AA seq
1920 aa
AA seq
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MEEDKSRALGNGDGAHSSYWLDACEYPPCDVVPEFVDFGAVVGDPAAQHSLVSADDFFGG
IDSILDSIKSGDAIPPPPTPSSEKTRAFVDAGSGCLIGCDSPPLTSNGGEQNGFQRHDDR
ESQRDLSRDERSNKRSRCIAHSGLAIHSMKGGNPYHRDREKERQSSLKRLRDWDELDRGD
RDHIRRRDHRSGSGRRDGREREWRDSEPSGYWERDRPGSNDIVFRLGTWEADRSREEKSR
TDDIQDCNGRVDDKPEDHKERFPEEQARQYQLDVLEQAKRKNTIAFLETGAGKTLIAVLL
IKSVCADLHKLNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQ
REFETKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPK
EKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPSEVV
VEYDKASSLWSLHEQIKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERT
ESDGAANLLQKLRAINYALGELGQWCAYKVAQSFLTALQNDERTNYQLDVKFQESFLSKV
VSLLQCQLSEGAALDKDTTSVGSGVMLDVTDIDEIEEGELPDSHAVSGGEHVDVIIGAAV
ADGKVTPKVQALIKILLEYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFIKCASLIG
HNNSQEMRTCQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQS
RGRARKPGSDYILMVERGNLSHAAFLRNARNSEETLRKEAIERTDLSHVKDASRLISQEA
ILGTVYQVESTGAIVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHERPGGPTEYSCR
LQLPCNAPFEKLEGPICGSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEEGNNVDQ
NDEGDPLPGTARHREFYPEGVADILQGEWILHGRDGCSDSKLLHLHMYAVNCENIGSTKD
LFLNQVSDFAVLFGNMLDAEVLSMSMDLFIARTMITKASLLYRGSVSITENQLKSLKSFH
VRLMSIVLDVDVEPSTTPWDPAKAYLFLPLVGDKSIDPLKEIDWDLVNEIIGTNAWSNPL
QRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGHKSHPTYGIRGAVAQFDVVKAAGLI
PHRDAFEMEKNQDLSEDKLMMADSCINSNDLVGRIVTAAHSGKRFYVDSICYDMTAENSF
PRKEGYLGPLEYSSYADYYRQKYGVELVYKQQPLIKGRGVSYCKNLLSPRFEHSEGESEE
ILDRTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESILLAIQLKDIIDYPVPASKI
LEALTAASCQETFCYERAELLGDAYLKWVVSKFLFLRYPQKHEGQLTRMRQQMVSNMVLY
EYALNKGLQSFIQADRFAPSRWAAPGVLPVFDEDTKDETSLFDVEHSLAEVGGGLVVNGA
EYDDDSIEDGEVESDSSSYRVLSSKTLADVVEALIGVYYVEGKKNAANHFMKWVGIRVEF
DNNEKECAIRPSNVPESILRSVNFDALESALNVKFKDRGLLVEAITHASRPSSGVSCYQR
LEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHLHLRHGSS
ALEKQIRDFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSAHDTAVVWQ
VFQPLLQPMVTPDRLPMHPVRELQERCQQQAEGLEYKASRNGNLATVEVFVDGVQVGVAQ
NPQKKMAQKLAARNALAVLKERETSDPKVNIDGKKKNGNQTFTRQTLNDICLRRNWPMPL
YRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKWFS
NT seq
5763 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggacaagtctagggctttagggaatggagatggagcccattcttcttactgg
ctcgatgcttgtgagtacccgccctgcgacgtggtccctgaattcgtcgattttggtgct
gttgttggcgaccctgctgcccaacatagcctcgtcagcgccgatgacttcttcggaggt
attgacagcattctcgacagcattaaaagcggtgatgcaatccctcctcctcctactcct
agctctgagaagactcgtgcttttgtcgatgctggctccggatgcctcatcggttgtgac
tctccgcccttaactagcaatggaggagagcaaaatgggtttcagaggcacgacgaccgg
gaaagccaaagagacctctctcgcgacgaaagaagcaacaagagaagcaggtgcatcgcc
cacagtggcctcgcaatccactcgatgaagggggggaatccttaccaccgggatagggag
aaggagagacaatcaagcctgaagaggctgcgtgattgggatgagcttgacaggggagat
agggatcacatcaggaggagagaccaccgcagcggttctggacgacgggatgggagggag
agggaatggagagatagcgaacctagcggctactgggagagggaccgcccaggttccaat
gacattgttttccggttaggtacttgggaagctgatcgtagcagagaggagaagtccaga
actgacgatattcaggactgcaatgggagggtggacgacaagcctgaggatcataaggag
agatttcctgaggaacaagcccggcagtatcagttggatgttctcgaacaggccaaaagg
aaaaacacaatagcttttctggaaacgggggcagggaagaccttaatcgctgttctgctc
atcaaaagtgtgtgtgctgatctacataaattaaacaagaaaatgctggctgtattttta
gtgcctaaagttccgcttgtttatcagcaagccgaagtgatccgtgagcgtactggttac
caagttggtcattattgtggcgaaatgggtcaggacttttgggatgcaagacgatggcaa
cgtgagtttgagacaaagcaggttttggtgatgactgctcaaattctgttgaacatccta
aggcacagtataataaaaatggaagctataaatctccttatattggatgaatgccatcat
gctgtgaagaaacatccatattccttagtgatgtccgagttctatcatacaacacccaaa
gagaagagaccgtctgtgtttggaatgactgcttcacctgttaatttaaagggcgtgtca
agtcaagtggattgtgcaatcaagattaggaatcttgaaagcaagcttgattctgttgtc
tgtaccataaaagatcgaaaggagctggaaaagcatgttccgatgccatctgaagttgtc
gtagagtatgataaagcgtctagtttgtggtccctccatgagcaaataaaacaaatggaa
gtggcagttgaagaagccgcacaatctagttcaaggagaagcaagtggcaatttatgggt
gctcgtgatgcaggtgcaaaggaagaactgcgccaagtttatggtgtttccgaaagaaca
gagagtgatggtgctgctaacttattacaaaagcttagagcaatcaattatgctcttggt
gagctgggacaatggtgtgcttacaaggttgcgcaatcctttttgactgctttgcagaat
gatgagagaacaaattaccagctcgatgttaagtttcaggaatccttcctaagtaaagtt
gtatctctcttgcaatgccaactgtcagagggggctgctcttgataaagatacgacatct
gtaggaagtggtgtcatgttggatgtaactgatattgatgagatagaggaaggagagctt
cctgacagtcatgctgtttctggtggagagcatgtggatgtcataataggagcagctgtg
gccgatggaaaggtgacgccaaaagtgcaggcattaattaaaatacttctcgaataccaa
catacagaggattttcgggcaataatatttgttgagcgtgttgtcgctgctttggtgctt
cctaaggtgtttgcagagcttccatctttaagttttattaaatgtgcgagcttgattggg
cataataatagtcaggagatgaggacatgccaaatgcaggagactattgccaaattccga
gacggtcgtgtgacattgctggttgcaactagcgtagctgaggaaggtcttgatatacgg
caatgcaatgttgtaattcgatttgaccttgcaaaaactgttttggcgtacattcagtca
cgtggccgtgctagaaagcccgggtcagattacatcttgatggttgagagggggaatttg
tcccatgcagcatttttgaggaatgcaaggaatagtgaggagacattgcgaaaagaagca
attgaaagaactgaccttagtcatgtaaaggacgcatccaggttaatttcacaggaggct
atactaggtacagtgtaccaggtagagtcaactggtgctatcgtcagcttaaactctgct
gtgggacttattcatttctactgctctcagcttccgagcgacagatattcaattcttcgt
cctgaatttatcatggagaggcatgagagaccaggaggtcccaccgaatattcctgcagg
cttcagctcccttgcaatgcgccttttgaaaaacttgagggacctatatgtggctcaatg
cggcttgcacaacaggctgtttgcttggctgcttgcaagaagctccatgagatgggagca
ttcactgacatgctattaccagataaaggaagcggggaagaagggaataatgttgaccag
aatgatgaaggagatcctcttcctggcactgcccggcacagggagttttatcccgagggt
gtggctgacatcctccagggagaatggatcttgcatggacgagatggttgcagtgactcc
aagttgcttcatcttcatatgtatgctgtcaactgtgaaaatattggctctacaaaggat
ttgtttttaaatcaagtttcggactttgctgtactgtttggaaatatgctggatgcagag
gtgttatcgatgtccatggatctatttatcgctcgaaccatgataacaaaggcatctctt
ctttataggggctcagttagtataactgagaatcagttaaaatctcttaaaagctttcat
gtaagattgatgagcattgtgctggatgtggatgttgaaccttcgaccactccatgggat
cctgcgaaggcttatttatttctccctttggttggcgataaatctatagatccacttaaa
gagattgactgggatctggtcaatgaaattattggaacaaatgcatggagcaatccactg
cagagagccaggccagatgtgtacctgggtacaaacgagcgtactcttggtggggacaga
agggagtatggatttgggaagttgcggcacggtatggcttttggacacaagtcccatcca
acttatgggattagaggagctgtagcacaattcgatgttgtgaaagctgctggattgatt
cctcacagagatgcctttgaaatggaaaagaatcaggacttatctgaagacaaattgatg
atggctgattcttgcataaattctaatgatttggtgggaagaattgtgacggctgcacat
tctggaaagaggttttatgtcgactccatatgttatgatatgactgcagaaaactcattt
ccaagaaaagaaggctatcttggcccgttggagtatagctcatatgctgattattacaga
caaaagtacggagttgaattggtctataaacaacaaccattgatcaaaggacgtggagtg
tcatactgcaagaacctactctcgcctagattcgaacactcagaaggtgaatctgaggaa
attcttgacaggacatattatgtgttcctcccccctgaactctgtcttgtgcatccactt
cccgggtcacttgttcgtggagctcaacgattaccttcaataatgagaagggtagagagc
atactgcttgcaattcaactcaaggatataatagattatccagtccctgcttcgaagatc
ttggaggctttgactgcagcctcatgtcaggagacgttctgttatgaaagagcggagctc
ctgggagatgcttacttaaaatgggttgtaagcaaatttttatttcttagatatccacaa
aagcatgagggtcagctgaccagaatgaggcaacaaatggtgagtaacatggttttgtat
gaatatgctttgaataaaggacttcaatcctttatccaagcggatagatttgctccatct
agatgggctgcaccaggagtgcttcctgtctttgatgaggatacaaaggatgaaacatcc
ttgtttgatgtggagcattcgcttgctgaagttggaggtgggttagttgtaaacggggct
gagtatgatgatgacagcattgaagatggtgaagttgagagtgactcaagttcttacaga
gttctgtctagcaagacactagcagatgttgttgaagcattgattggggtgtattatgtt
gaaggtaagaagaatgctgccaatcacttcatgaaatgggtgggaatacgggttgagttt
gataataatgagaaagaatgcgcaatcaggccatcaaatgtgccagagagcatcctcagg
agtgtcaattttgatgctttagaatctgcccttaatgtcaagtttaaagatagaggcctc
ttggtagaagctattactcatgcttcacgaccatcttctggagtctcttgctaccagcgg
ttggagtttgttggtgatgcagttctggatcatcttattacaaggcatttgttcttcact
tacactgatcttccgcctggccgcttgactgatttacgagctgctgctgtaaacaatgaa
aactttgcacgtgttgcggttaaacacaagctccatttacaccttcgtcatgggtctagt
gccttggagaagcagatcagggacttcgtaaaggaagttcaagatgaattgtcgaagcca
ggtttcaactcttttggtttaggagattgtaaagcaccaaaagtccttggcgatattgtt
gaatccattgctggtgctatattccttgatagtgcacatgatactgctgtcgtgtggcag
gtttttcagcccttgttgcaacccatggtcactccagatagactccccatgcatcctgtc
agggagctgcaagaacgctgccagcagcaggctgaaggcttggagtataaggcctctcga
aatggcaacttggctacagttgaagtctttgttgatggggtacaggttggggtcgctcag
aatccgcaaaaaaagatggcgcagaaacttgctgcacgaaatgctcttgctgttctgaaa
gaaagggagacatccgatcctaaggtgaacattgatggaaagaagaaaaatggtaaccaa
acatttacgaggcagacactaaacgacatatgtttgcgtcgaaactggccaatgccatta
tataggtgtgtaaatgagggtggccctgcacatgcaaagcggttcacttttgccgttcgt
gtaaacaccactgacaggggatggacggatgaatgtgtgggggagcccatgccaagtgtc
aaaaaggcgaaggactctgctgctgttcttctcttggaacttctaaacaaatggttctct
tga
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