Rhodamnia argentea (silver malletwood): 115744367
Help
Entry
115744367 CDS
T10595
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X2
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115744367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rarg04131
]
115744367
Membrane trafficking [BR:
rarg04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115744367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
TPR_Vps41
Clathrin
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
WDR55
Beta-prop_RIG_2nd
TPR_VPS8_2
Beta-prop_WDR5
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WD40_Gbeta
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_THOC3
MinC_N
zf-RING_2
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
115744367
NCBI-ProteinID:
XP_030535346
UniProt:
A0A8B8PKL6
LinkDB
All DBs
Position
9:8299290..8311532
Genome browser
AA seq
1913 aa
AA seq
DB search
MELDVLSFLNSQNHHHRGDDDDDDEADDEADWTSFPHRTIEEILNDSLSDSDSSPSPPPP
ASSPPSSPQQRTQPSIRGSLDAFRSLVSPPPPPPPPPPPRPPPLPDDGKPTSSNSRLKAP
DSLLWVSSSSRQLPSLFGGVRSNAKPGAALAAAAAASRSLPTPHAAAIKSRRALLTPSSS
SSSSSFPSISNSHDALDSSVDALHGLDSQLRFQHKDDAEDDDGKMGEFQSALGHAIDLAP
EDRLEAEAPALDEEEEEELVSSPPDQQHSTVESPADSDLVADSSPAAHEIITDDTPTLAI
PNHPHEKDAGNEEALEEHGLSEDRDNASSSADIDELVQERIEELESKRMSEKTEKKPQKK
PLVLAEEIERKQASTGLHWEEGAAAQPMRLEGVRRGSTTLGYFDVDSDNAITRTISSQAF
SRDHGSPQVLQVHPNFIAVGMSKGVILVLPSKYSATNADNMDAKMMILGLQGDRSQASVA
SMCFNQQGDLLLAGYGDGHITVWDLQRGSAAKIISGEHTAPVVHTLFLGQDSQVTRQFKA
VTGDSNGLLLLHTLSVVPLLNRFTVKSQCLLDGQKTGTVLSASPLMYDEFLGAVSMSSSG
NSSTSSSSIGSMMGGVVGPDAGWKLFNESTSLNEEGVVILVTHQTALVVRLSPALKVYAT
LSRPDGVREGSMPYTAWKCVLQAYSSPDESAPEAATERVSLLAIAWDRKVQVAKLVNSEL
KVYGKWSLDSTAVGVAWLDDQMLVVLTVDGQLCLFSREGNMIHQTSFAVDGVAKDDLVAY
HTHFNNLFGNPEKAYHNSIAVRGASIYVLGAVHLVISRLLPWRERIQVLRKAGDWMGALN
MAITLYDGQAHGVIDLPRTLQAVQDAIMPYLVELLFAYVDEVFSYISVAFCNQIGKVQQM
DDHMTRSSSVRNEIKEQFTRVGGVAVEFCVHINRTDILFDEIFSRFVAVQHRDTFLELLE
PYILKDMLSSLPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVKLCREHGLYC
ALVYLFNRGLDDFRSPLEELLVVFCKSPKESAGALGYRMLVYLKYCFSGLSFPPGHGSIS
PTRLPSLRTELLQFLLEKSETSRALSEGVYCNLYHLLELDTEATLDVLRCAFVEDEIQKS
DFARHDSANQVVEMGFDPTRENKVVQDLVNALICILDEDIFQVDGHGGSNNKSADAWPSR
IDIGHLYEFIASFVTRERAKIPKDILNRILEHLTSENAPLPGEERNKMREKQVLSLLETV
PENEWDASYVLHLCEKAQFYEVCGYIYTIRDQYIAALDSYMKDVDEPIHAFAYINNALLH
LNETEHAAFRSAVFSRIPALVDLSREGTFLLVIDHFSTEGSRVLSELNSHPESLFLYLKT
IIEVHFSGTLDFSCLRRRNTDTPDGTSGHAQLRGVETYLERISDFPKYLRNNPVHVTEEM
IEHYFELLCQYDRHSVLKFLETFDSYRVEHCLQLCQEYGITDAAAFLLERVGDVGSALLL
TLSSLSEKFEKLDAAMIDATSEATRDDSYSLENFSTVLRMEEVNDIKRTLDLCIGLCQRN
TPRLNPEESETLWFKLLDSFCEPLLGLPTGKIASVEVNSDGIYSKSQDDDASPIIKWTLN
SHGGAPILRKLISQFIKEIVEGMIGYVRLPTIMSKLLSENGSQEFGDFKLTILGMLGTYG
FERRILDTAKSLIEDDTFYTMSLLKKGASHGYSPRSLVCCVCNCLLNKNSSSSTVRVYNC
GHATHIQCEITESETSSKGSSSGCPVCLPKKKSQKSGSKSVLGENGLVSKLSSRRQQLQG
ANVLASHERINDALDNPYSLQQISRFDILNSLQKGQESIQIESLPQLRLAPPAVYHEKVK
KATDFLIGESSSDLIKEERASRKRQLRELKAKGSSIRFPLKTNIFGKERTSNR
NT seq
5742 nt
NT seq
+upstream
nt +downstream
nt
atggagctcgacgtcctttcttttctgaattcccagaatcatcaccaccgtggcgacgac
gacgatgacgatgaagccgatgacgaagccgactggacttcattccctcaccggaccatc
gaagaaatcctcaatgactccctttccgattccgattcttctccttctcctcctcctcct
gcctcgtctcctccatcctccccgcagcagcgaacccaaccatccatccgcggctccttg
gatgccttcagatccctggtgtcgccacctccgcccccgcccccgcccccaccacctcgg
ccccctcccttacctgatgatgggaagcctacttcttccaattctcgactcaaagctccc
gattccctcctctgggtatcgtcttcatctaggcagctgccttccctctttggcggggtg
aggtccaatgccaagccgggggctgcgctcgccgccgcagccgccgcctcccgctcgctc
cctacccctcacgccgccgctatcaagtcccgcagggctctcctcaccccttcctcctcc
tcctcctcctcctcttttccttcgatctccaattcccatgatgccttggactcttccgtt
gacgctctccatggcttggacagtcagttgaggttccagcacaaggacgatgctgaagac
gatgatggtaagatgggcgaattccaatccgctttagggcatgccattgatcttgctcct
gaagatcgccttgaagctgaagctccagcgcttgacgaggaggaagaagaggaattggtt
agttcccctcctgaccaacaacattccacggtcgagtccccggcagattctgacctggtc
gctgacagttcgcctgcggcacacgagataatcaccgatgacactcccacactcgcaatt
cccaaccatccccacgagaaggatgcaggtaacgaggaagctcttgaagagcatggcctt
tctgaagatagggataatgcgagctcatcagctgacatagatgagctcgtccaagagaga
attgaggagttggaaagcaagaggatgagtgagaagaccgagaagaaaccgcagaagaag
cctctcgtgttggctgaagagattgagaggaaacaggcatccacaggtctccactgggaa
gagggtgcagcggctcagccaatgaggcttgagggtgtccgcaggggatccaccacattg
ggatacttcgatgttgattcggacaatgctattacccggaccatttcttctcaggcattc
agccgtgaccatggctccccccaggtcttgcaggttcatcccaatttcattgccgttggg
atgtcaaaaggggtcatccttgttctgccctctaagtattctgccacgaatgccgacaac
atggacgccaagatgatgattcttgggttgcaaggggatcgatctcaagcctcggtagct
tccatgtgcttcaatcagcagggagacctgctcttagctggttatggtgacggtcatatt
acagtctgggatttgcagagaggatcagctgccaaaattattagtggggaacacacagca
ccagtagtacacacactgtttctaggccaggattctcaagttactcgtcaatttaaggca
gttacaggtgatagcaatggactgcttttgttgcatactttatcagtagttcccttgctt
aatcggttcaccgtcaaatcacagtgtcttcttgatggtcaaaagactgggactgtgcta
tcagcgtcacctcttatgtatgatgaatttcttggagcggtttccatgtcctcctcaggg
aacagcagcacttcaagtagcagtattggtagcatgatgggtggtgttgttgggccagat
gctggttggaaactattcaatgaaagcacctctttgaatgaagaaggtgtggtcatacta
gtcacccaccaaactgctctggtggtaagactcagtcctgctttaaaagtttatgcaaca
ttgtctaggccagatggtgttcgggaggggtccatgccatatactgcatggaagtgtgtg
ctgcaagcatatagttctcctgatgaaagtgctcccgaagcagccaccgaacgagtctca
ttgctcgctattgcttgggatcggaaagttcaagttgctaagctggtcaactcggaactg
aaagtttatgggaagtggtctcttgacagcacggccgtaggagttgcctggttagatgac
cagatgctcgtggttctgacagttgatggacagctttgcttattctcgagggagggtaat
atgattcaccagacaagttttgctgtcgatggtgttgcgaaagatgatctcgtggcatat
catacacacttcaataatctgtttggaaaccctgagaaagcttatcacaactctattgct
gtgaggggtgcgtctatttatgttctaggagctgtgcatcttgtcatttcgcgcctccta
ccttggagggaaaggattcaggtcttacggaaagcaggtgattggatgggtgccttgaac
atggctattacactgtatgatggccaagcccatggggtcattgaccttcctaggaccctg
caagctgttcaagatgccataatgccttacctggtggagttgctttttgcgtatgtagat
gaggtattttcttatatttcagtggcattttgcaatcaaattggcaaagtgcaacaaatg
gatgaccacatgactagaagcagttccgtccgtaatgaaataaaagaacaatttacccgc
gtcggtggtgttgctgtcgaattctgtgtacacatcaacagaacggacattcttttcgat
gagatcttctcccgatttgttgctgttcaacatagagacacattcttggagcttttggag
ccgtatatattgaaggatatgctcagttctctacctcctgagataatgcaagcattggtg
gaacactatagcagcaaagggtggctacagcgagttgaacaatgtgtcctccacatggac
atatcttccttggatttcaatcaggttgttaaattgtgccgggagcacgggttatattgt
gcattggtgtatcttttcaacagaggattggatgatttcagatcacctctggaggagttg
ttggtagtcttttgcaagagtccgaaggagagtgctggtgcccttgggtacaggatgctt
gtttatctaaagtattgcttttctggtctttctttccctcctggacacggaagtatttcc
ccaacccgccttccctctcttaggacagaacttttgcagtttttgctggaaaagtcggaa
acttcaagagcgttgtctgaaggagtctactgtaatttgtatcatctcttagaattagat
actgaagctactttagatgttttaagatgtgctttcgtagaagatgaaatccaaaaatcc
gattttgctagacatgactcagccaaccaagtcgtggaaatgggatttgatcctaccagg
gaaaacaaagtggttcaggatttggtaaatgctctcatttgtatccttgatgaggacata
tttcaagtagatggtcatggaggatctaataataaatctgcagatgcctggccttcaaga
atagacattggacacctttatgagttcattgcatcttttgttactcgtgaaagggcaaag
attccgaaagacatattgaaccgtatcttagagcacttaacatcagaaaatgctcctcta
ccgggagaggaacgtaataaaatgagagaaaagcaggtactttcccttctggaaacagtg
cctgagaatgagtgggacgcgtcttacgtcttacacctatgtgaaaaagcacaattctat
gaggtttgtggctatatttatactatccgagatcagtatatcgctgctttggatagttat
atgaaagatgtggatgaacccatacatgcctttgcttacatcaacaatgctttgctacat
cttaatgagactgagcatgctgcttttcgctcagcggtgttttctcgaattccagcgctg
gttgacttgagtagagaaggaacattcttgttggttattgatcatttcagtacagaaggt
tcacgggttctctctgaactgaactcccatccagaaagcctttttctatatctaaagaca
ataattgaagtacacttctctgggacccttgatttctcatgcttaaggaggaggaatact
gatacccctgatggaacaagtggacatgctcagttaagaggagttgagacgtacttggag
agaatctctgatttccctaagtatttgcgcaacaatcctgttcatgtcactgaggaaatg
attgaacattattttgagttactatgtcaatacgaccgccattcagttcttaaattcttg
gagacatttgatagctaccgggtggagcattgtttgcaactttgtcaggagtatggaatc
acagatgcggctgcatttttgttggaaagggttggtgatgttgggagtgctctcttgctt
actctgtcgagcctcagtgaaaaatttgagaaactcgatgctgctatgatagacgccact
tctgaggcgacacgagacgattcctatagcttggaaaatttcagcactgtattgagaatg
gaggaggtgaatgacataaagagaacattggatctttgtattggattatgccagcgtaat
acacctcggttaaatcctgaagagtcggagaccctgtggtttaaattgcttgattcgttt
tgtgaaccattactgggcttacctactggcaaaattgcatccgtggaggtaaatagtgat
ggaatatatagcaaatcccaggatgatgacgcatcacccataattaaatggactctgaat
tctcatggaggtgctcccattttgagaaaattgatatctcaattcataaaagaaatcgtc
gagggaatgataggatatgttcggcttccgactatcatgtctaaactcctctctgaaaat
ggtagccaggagttcggtgatttcaaacttaccattttagggatgctcgggacctatggc
tttgaaagaagaattctggatactgctaagtccttgatagaggatgacacgttttatact
atgagcttgctgaagaaaggagcatcccatgggtattcccctcggagtctagtgtgttgc
gtatgcaattgtcttctcaacaagaattcgtctagctccacggttcgtgtgtataattgt
ggtcatgccacccatatccaatgtgaaattacagaaagcgaaacctcaagcaaaggatct
tcatctgggtgtccagtctgtttgcctaagaagaagagtcagaaatcaggaagtaaatca
gtccttggagagaatggtctagtgagtaagctctcatcaaggcgtcaacagttgcaaggg
gctaacgttcttgcttcacacgagagaatcaacgatgcactagacaacccttacagcctt
cagcaaatatcaaggttcgacatattgaatagtcttcagaagggccaggaatcaattcaa
attgaaagcctacctcagttgaggcttgcaccgcctgctgtttaccatgaaaaggtgaag
aaggcaaccgactttttaataggagaaagtagcagtgatcttattaaggaagagagagca
agtagaaagagacagctgagggaactcaaagcaaagggatcatcaattcgttttccactg
aaaacaaacatatttggaaaggagagaaccagcaaccgctga
DBGET
integrated database retrieval system
