Rhodamnia argentea (silver malletwood): 115744642
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Entry
115744642 CDS
T10595
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03018
RNA degradation
Brite
Enzymes [BR:
rarg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115744642
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
115744642
Spliceosome [BR:
rarg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
115744642
Complex C
U4/U6.U5 tri-SnRNP related factors
115744642
Ribosome biogenesis [BR:
rarg03009
]
Eukaryotic type
Pre-60S particles
Helicases
115744642
Transfer RNA biogenesis [BR:
rarg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
115744642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
115744642
NCBI-ProteinID:
XP_030535778
UniProt:
A0A8B8PNI5
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Position
4:complement(17922554..17933257)
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AA seq
993 aa
AA seq
DB search
MEALGKRKGPDSSEITDPYTGSSDQRNDESAAKRHNSSRTCVHEVAVPTGYNSNADESLY
GTLSNPAYSGEMAKTYPFKLDPFQQVSVACLERKESVLVSAHTSAGKTAVAEYAIAMSFR
DKQRVIYTSPLKALSNQKYRELSQEFKDVGLMTGDVTIAPNASCLVMTTEILRGMLYRGS
EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNLH
KQPCHVVYTDFRPTPLQHYVFPMGGSGLYLVVDEREQFREDNFLKLQDTFTKQKVGEGSK
FTNGKASGRIAKSGNASGGSSIYKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFN
TQEEKDVVEQVFRNAVLCLNEEDRNLPAIELMLPLLQRGIAVHHSGLLPVLKELVELLFQ
EGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDER
GICIIMIDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFH
QFQYEKALPNIGRKVQKLEEEVASLDASGEVEVAEYHKLKLEIAQLEKNMMAEITRPERV
LYFLLPGRLVRIREGGTDWGWGVVVNVIKKPSTGLGTLPSRGGGYIVDTLLHCSPALGEN
SSRPKPCPPRPGEKGEMHVVPVQLSLVSALSKLRISIPADLRPLEARQSILLAVQELGSR
FPQGLPKLNPVKDMGIEDPDIVELVNQIEELERKLLSHPLHKSQDAHQMRSFQRKAEVNH
EIQELKSKMRESQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTE
LMFNGTFNDLDHHQIAALASCFIPGDKSNEQIHLRTELARPLQQLQDSARRIAEVQRECK
LDVNVDEYVESTVRPYLMDVIYCWSKGASFAEVIQMTDIFEGSIIRSARRLDEFLNQLRA
AANAVGETNLENKFAAASESLHRGIMFANSLYL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggaagctttggggaaaaggaaaggaccagactcttctgaaatcaccgatccctatact
gggtcttcagatcaaagaaatgatgaatccgctgcgaagcggcataattcgagtcggaca
tgtgtgcatgaagttgctgttccaactggttataattcaaatgcagatgaatcactgtat
gggactctctcaaatcctgcttacagtggtgagatggcaaaaacttacccattcaaactt
gacccttttcagcaagtttctgtagcatgtttggagcgaaaggagtcagttttagtgtca
gcacacacttcagccggtaaaactgcagttgctgaatatgccattgcaatgtcttttaga
gataaacaaagggtaatatatacatctcctttgaaagctttgagcaaccagaagtatagg
gagctaagtcaagagtttaaagatgtcgggttgatgactggtgatgttaccattgcacct
aatgctagctgcttggtcatgacaacagaaattcttagagggatgctgtataggggttct
gaggtattaaaggaagttgcatgggttatctttgatgagatacattacatgaaggatcga
gaaagaggtgttgtttgggaggagagtattatattcttgccacctgccattaaaatggtt
tttctttctgcaacaatgtcaaatgctactgagttcgcagaatggatttgcaacttgcat
aaacagccatgccatgtagtatacacagatttcagaccaactccgctgcagcattatgtt
ttccctatgggtgggagtggtttgtatcttgtagttgatgagcgcgagcaattcagagag
gacaactttcttaagcttcaagatacttttacaaagcagaaagttggcgaggggagcaag
tttaccaatggaaaagcgagcgggagaattgccaaaagcggcaatgcctcagggggttct
agcatatacaaaattgtgaagatgataatggagcgtaagtttcaacctgtcatagttttc
agctttagtaggcgagagtgtgaacaacatgcaatgtcaatgtccaagcttgattttaac
acacaggaggaaaaggatgtggtggagcaagtttttcgcaatgctgtcctgtgcttgaat
gaggaagatagaaacttacctgccattgagttgatgctgccgttacttcaacgtggaatt
gctgttcatcattctggccttctccctgttcttaaggaattggtggagcttcttttccag
gaaggcttagtgaaggctctttttgctacagaaacttttgccatgggtctgaacatgcct
gcaaagacagtggtttttacagcagttaagaagtgggatggtgatagtcatcggtacatt
ggatctggggagtacattcagatgagtggaagagctggccgtcgtggaaaagatgagcgt
ggtatctgtattataatgattgatgagcagatggagatgaatacactcaaggacatggtt
ttggggaaaccagctcctttagttagcacattcagactaagctattactcaattttgaat
ctgatgagccgagctgaaggacaatttactgctgaacatgtcataaagaactcatttcat
caatttcagtatgagaaggccttgcccaacattggaagaaaagttcaaaaactggaagaa
gaagttgcaagtctcgatgcttctggggaggttgaagtagccgagtatcataagctgaag
ttggaaattgctcaactggagaagaacatgatggcagagataaccaggcctgagagagtt
ctctattttcttttgccgggccggctggtgaggattagggaaggtggaacagattggggt
tggggagttgtagttaatgttatcaaaaagccctcaactggtttgggtacattgccatca
cgaggtggtggatatattgtggatactttacttcattgttctccagctttaggtgagaat
agttcaaggcccaaaccttgtccacctcgccctggagaaaagggcgaaatgcatgtggtc
cctgtgcagttgtccttagtttctgctcttagcaaactcagaatttcaattcctgctgat
ctccgaccactggaagcaaggcaaagcatattacttgctgtccaagagcttggaagtcgt
tttcctcagggtctcccaaagcttaatcctgtaaaggacatgggtattgaggatccagat
atagttgagttggtcaatcagatcgaggaacttgaacgaaaattattgtctcatccattg
cacaagtctcaagatgcacatcagatgagaagttttcaaagaaaagcagaagtgaatcat
gaaattcaagaacttaaatcgaagatgcgtgaatctcagctgcaaaaatttcgtgatgaa
cttaagaaccgttctcgggtcttaaaaaagcttggccacattgatgctgatggtgttgtc
cagttaaagggacgggcagcctgcttgattgacacaggggatgaactacttgtcactgaa
ctgatgtttaacggtacattcaatgatcttgatcatcaccaaattgcggctcttgctagt
tgtttcatccctggagataaatcgaatgaacagattcatttgaggactgaacttgccaga
ccattgcagcaactccaggacagtgcaaggagaatagcggaggtgcaaagggagtgcaag
ttagatgtaaatgtggatgaatatgtggaatccacagtcagaccatacttaatggatgtg
atctactgctggtcaaagggagcaagctttgcagaagttatacagatgactgatatattt
gagggtagcattattagaagtgccagaaggcttgatgagtttttgaaccagcttcgagct
gctgctaatgcggtgggagaaaccaatctcgaaaacaaatttgctgcagccagtgaaagt
ctccatagggggataatgtttgccaattccctctacctctaa
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