Rhodamnia argentea (silver malletwood): 115745760
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Entry
115745760 CDS
T10595
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115745760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rarg03021
]
115745760
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115745760
Transcription machinery [BR:
rarg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115745760
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
115745760
U7-dependent histone pre-mRNA processing factors
115745760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
CRM1_C
Motif
Other DBs
NCBI-GeneID:
115745760
NCBI-ProteinID:
XP_048127120
UniProt:
A0ABM3GS09
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Position
10:complement(4325916..4349441)
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AA seq
1306 aa
AA seq
DB search
MVAIVAAATPRERLAGLVGSAKGSPDIPSKLGRLRDLKEDLLQDDPVLLAEFLPQLLDLL
SDRFSPVRKFITQIIGEIGIKQLEFLPEMVPVLISVLDDESPPVARQAISCGIDLFRHTF
ERIAIQGLYTSDLDDSLESSWEWMLKFKDKVYSIAFQPGSDGIKLPALKFVQAIILLYTP
DPNGSSEPPSDQRLEGNLLGFNASWLRGGHPILNVGDLATEASKNLVLLLDQLRSPTVKS
LSYLKIVVLINSVSAIAKERPAYYGRILPVLLGLDPTSSVTKGAHVSGVRLALKNAFRSC
LESTYPGVALWHDQLLDAVREMKDGPVVEQTLDQDYKINGSLEGKEEPSVSDEEKPSISP
HDSTQISRGRKRVETEDHTFEVDVSGKRIKPSPSMSEESSNELNRKGRVYQEENASSGAL
SSKAESDSGTVHQLVAMFGALVAQGEKAVQSLEVIISTISADLLAEVVMANMCHLPSDRP
KADEDEEGLQDVFSLSSAFPQISSILAAEQLQKPEKPDDLHVVAATNDVALQTDKTNEVE
SSISPTALPTSNDASAGTETGSVMLSIDIHEDRNLESEIPGLASSSHSAGHSENRPDSSL
ASMGIEDNGQEQDTSQSGKSLVESIPSISNDRYEELSPRPLVVDDNIPVSSSVTSVGLTS
PVTLPKMSAPVIDLTDEQKDQLQKSAFTRIIETYKEVAVAGGSEARSSLLSYLGVEFPLE
LDPWILLHQHISSDYVNHEGHELTLHLLYRLFGEAEVERDFFSSTTASSSYESLLLNVAE
TLKDAFPPSDKSLNRLLGEVPHLPQSVLKLLGSLCSPGNVEKAEKELQAGDRVTQGLSAV
WSLILLRPPIRDSCLKISLQSTVHHLEEVRMKAIRLVANKLYPLSSIAKRIEDFAKEMLL
SVTSSGLLDKVALEGKDSDVERPLEERAMGEASNEDRSSDTSQLHAAESVAISEAQRCMS
LYFALCTKRHSLFREVFVIYGGASTAAQQAIHRHTPILVRTMGPSSELLEIISDAPGGSE
NLLSQVLHSLTDGIVPSPELVLTVRKLYDSKLKDIEILMPILPFLPKDEVLLIFPRLVNL
PIDKLQAALLRILTGSSHTDPLISPAEILIAIHGIDPDRDGIPLKKIIDACNACFEQRQM
FTQPVVAKVLNQLVEQIPLPLLFMRTVLQAIGAFPALVDFVMEILSRLVSKQIWKYPKLW
VGFLKCAASTKPQSFTVLLQLPPAQLENALNRMPALKEPLVAHASQPDIRSSLPRPLFIF
RSLLVVLGIAPDSQAPSHVQASEAQTGDTGTSDKEVVNEKDSSNAS
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atggtggcgatcgtggccgccgcaactcccagagagaggctcgcgggcctcgtcggctcc
gccaaggggtcgcccgacatcccctcgaagctcggccgcttgcgcgacctgaaggaggac
ctcctgcaggacgaccccgtcctgctcgccgagttcctccctcagctcctcgacctcctc
tccgaccgcttcagtcccgtgcgcaagttcatcactcagataattggtgaaattgggatt
aagcagctagaatttctacctgaaatggtgcctgttttgatttcggtcttggacgatgag
tcgccgccagttgctcgccaagctataagttgcggtattgacttatttcgtcacactttc
gagagaattgcaatccagggactatatactagtgatctggatgattcactggagtcatct
tgggaatggatgttgaaattcaaggataaagtatactcaatagctttccagccgggaagt
gacgggataaagttgccagcactgaaatttgttcaagcaatcattctactctatacgcct
gatcctaatggatcttcggagcccccttcagatcagcgcttagaaggaaacttgttgggc
ttcaatgcatcatggcttcgtggtggtcatcctatattaaatgttggggatttggctacg
gaagctagcaaaaatcttgttttattgcttgatcagctaaggtctccaacagtgaaatct
ctcagttatctaaaaatcgtcgtgcttattaatagtgtttctgcaatagccaaggaaagg
cctgcatactatggacgcattttgccagttcttcttggtttggatccaacaagttctgtt
acaaagggtgcacatgtatctggagtacgccttgcactaaaaaatgcttttcgttcctgc
ttagagagcacctatccgggtgttgcactgtggcatgatcagttacttgatgccgtgagg
gagatgaaagatggaccagtagttgagcaaacccttgaccaagactacaagataaatgga
agtttagaaggaaaagaggagccttcagtttctgacgaagagaaaccatctatatcaccc
catgattctacccaaattagtagagggcggaaaagagtggaaacagaggatcacactttt
gaggtggatgtctctggaaaacgaatcaaaccaagtcctagcatgtctgaagaatcaagt
aatgaattgaacagaaaaggcagagtctatcaggaagaaaatgcttcgagtggagcactc
tcttccaaagcagagagtgattctggaactgtgcatcaactggttgccatgtttggtgcc
ttggttgctcagggtgaaaaagctgttcagtctttagaggtcattatttccactatatct
gcagacttgctggctgaggtggtcatggcaaatatgtgtcatctcccttctgatcgccct
aaagccgatgaagatgaagaggggctgcaggatgttttttcactttccagtgcttttcca
cagatatcttctatactggctgctgaacagctgcagaagcctgagaagccagatgatctt
catgtggtggcagcaacaaatgatgttgctcttcaaacggataaaactaatgaggttgag
agttctatttcgccaactgctttgccaacttccaatgatgcttcagctggaacagaaacg
ggctccgtgatgctatcgattgatatccatgaagatagaaacttagagagtgaaatacct
ggtcttgcttcatccagccatagtgctgggcactcagaaaaccggcctgattcctcatta
gcatccatgggtattgaagataatggtcaagagcaagatacgagtcaatcggggaaatca
ttagtagagtcaattccatcaatttcaaacgatagatatgaggagcttagccccagaccg
ctggttgttgatgacaacattccagtctcctcatctgtaacttctgttggattaacttct
cctgttacgttacccaagatgtcagcccctgttattgatttgactgatgaacagaaagat
cagttgcagaaatcagcattcacccgcattattgagacatataaggaagttgcagtggct
ggaggttcagaagctcgctcttctttgctttcttatctgggagttgagtttcccttggag
ttagacccatggatactgctacatcagcatatatcatcagattatgtgaatcatgaggga
catgagttgacactgcatctcctctacagattatttggggaggcagaagtggaacgtgac
tttttctcttctacaactgcttcctcttcttacgaatcactgcttttaaatgtggcagaa
acattgaaagatgcttttccaccttctgacaaatctctgaacagattgcttggtgaagtt
cctcatcttccgcagtcagttttgaaattattaggtagcttatgctctcctggtaatgtg
gaaaaggccgagaaggagctacaggctggagatcgggtcactcagggtctgagtgctgtt
tggagtcttatcttgctccgccctccaattcgagattcttgcttgaaaatctctttgcag
agtacagttcatcacttggaggaagtccgcatgaaggcaatccgtctggtagcaaacaaa
ctgtatcctttatcatccattgctaaaagaatagaagactttgcaaaggaaatgttgctt
tcagtgactagctctgggcttctggacaaagtggcacttgaagggaaggattctgatgta
gaaagacctttggaagaacgtgcaatgggggaagcaagcaatgaggatagatcatctgat
actagccaattgcatgctgcagaaagcgtagccatctctgaggcccagcgctgcatgtcc
ttgtattttgccctttgcacaaagagacactctctttttcgcgaagtatttgttatctat
ggaggtgcatctacggcagcacagcaggcaattcaccgtcatacccctattttagtccga
acaatggggccgtcatctgaacttcttgaaataatatcagatgctcctggaggaagtgaa
aacctcctgtctcaggttttacactccctgacagatgggatagttccttctcctgaatta
gtacttaccgtgaggaagttatacgattccaaattaaaggatatagagattctaatgcct
attttgccattcttaccaaaagacgaggtgttgctaatatttccacggcttgtcaatctt
ccaattgataaattgcaagctgcgcttcttcgtatattaacgggatcatctcatacagat
cctctaataagtcctgcggaaattttgattgctatccacgggattgaccctgacagggat
gggattcccttgaagaagatcatagatgcatgcaatgcttgctttgagcaacggcagatg
ttcacgcaaccagtggtcgcaaaggttttgaatcaactggttgaacagattcctcttcct
ttgttgttcatgcgaactgttttacaagcaataggtgcctttcctgcgttggtggatttt
gtaatggagattctttcccgcctcgtgagcaagcagatatggaaatatcctaaactgtgg
gtgggatttttgaagtgcgctgcctcgacgaagcctcagtcatttactgtgctactacag
ctgcctcctgcacagttggagaatgccctgaataggatgccagcactcaaggaacctttg
gtagctcatgcctcccagcctgacatacgctcctctcttcccaggccattgttcatcttc
aggtctcttctagttgttttgggaattgctccagattcgcaagctccaagtcatgtgcaa
gcaagtgaggctcagacaggggatactggcacttcagataaagaagttgtaaatgagaag
gattcatcaaatgctagctaa
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