Rhodamnia argentea (silver malletwood): 115745836
Help
Entry
115745836 CDS
T10595
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115745836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rarg03021
]
115745836
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115745836
Transcription machinery [BR:
rarg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115745836
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
115745836
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
zf-CCCH_12
Torus
Motif
Other DBs
NCBI-GeneID:
115745836
NCBI-ProteinID:
XP_030537303
UniProt:
A0A8B8PSS8
LinkDB
All DBs
Position
7:19177612..19187417
Genome browser
AA seq
703 aa
AA seq
DB search
MEDAEGVLSFDFEGGLDAGPPNPTASVPAVNSDPSASAAAAAASAVGGPGGGGGGGGGGA
PTAAGADSTAGGGNLGGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLY
GECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPSVEEVLQKIQQLNS
YHYGNSNRYFQQRNAGAAQHNERAHFSVGTNAVNQSAIVKPSTTESANLLQQQQQQQQLP
VQQSQQQPSQTQQQNPSSSTPNQAGRGPTPLPPGVSRYFIVKSCNRENLELSVQQGVWAT
QRSNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSRIGGAASGGNWKYAHGTAHYGR
NFSVKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELM
AISLAAESKREEEKAKGLNPDNGAENPDIVPFDDNEEEEEEEEESEEEEESYGPLLGPAS
LGRGRGRGMMWPPMQLARGARPIPGMRPFAPGMMGADGFPYGGVAPDGFGMPDLFGVGPR
PFPPYGSRFSGDFSGPASGMMFPGRPIQPGSVFPTGGFGMMMGPGRGPFMGGMGPARAGR
PAGMPGGLPPPPSQNLNRLVKRDQRPSPGAGSDQGRDQESMGPSEGADHDRSHQLGPRAH
HENNSLRNEESESEDEAPRRSRHGEGKKKRRGGDAVVAIAPNR
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgctgaaggtgttctcagcttcgattttgagggcggccttgacgccggcccc
cccaaccccaccgcctcggtccccgctgtcaactccgatccctctgcctccgccgccgcc
gccgccgcttccgccgtcggaggaccgggaggaggaggaggaggaggaggcggcggcgcc
cccactgctgctggggcggactccacggcagggggtggtaacctcggcgggaggcggagc
ttccggcagacggtgtgccggcactggctccgcagcctgtgcatgaagggcgacgcttgc
gggttcctccaccagtacgacaagtctcgcatgccaatttgccgattcttccggctctat
ggtgagtgccgcgagcaggactgcgtgtacaagcataccaacgaggatatcaaggagtgt
aacatgtacaagttgggtttttgtccaaatggtcctgactgccgatataggcatgcgaag
ctacctggacctccaccttctgtggaagaagtccttcaaaagattcaacaattgaattcg
taccattatggcaattcaaacagatattttcagcagcgtaatgcaggcgctgctcaacat
aatgaaagagctcacttttcagtaggaaccaatgctgtaaatcaaagtgctattgtaaaa
ccttcaacgacggagtctgctaatctgctgcagcagcagcagcagcagcagcagctgcct
gttcagcagtcccagcaacagcccagccaaacgcagcaacagaatccttctagcagcaca
cctaatcaggcaggcagaggtcctactcctttgcctccaggagtatctaggtatttcatt
gttaaaagttgtaaccgtgaaaatctggagttatctgtacaacaaggagtatgggcaact
cagaggagcaatgaggctaaactgaatgaggcatttgactctgctgaaaatgtgattttg
atcttttccgtcaaccgcacacgtcattttcagggctgtgcaaagatgacttcgagaatt
ggtggagctgcaagtggggggaactggaaatatgcacatggaactgcacattatgggcga
aatttctcagtgaagtggttaaagctctgtgaattatcctttcaaaagactcgccatttg
aggaacccatacaatgaaaacttaccagtcaagatcagcagagattgtcaggagctagag
ccctcagttggtgagcagttggcgtccttgctttatctagagcccgatagtgaactcatg
gcgatttctctggcagctgaatctaaacgtgaggaggaaaaggccaaaggattaaatcct
gataacggggcagagaatccggatatcgttccatttgatgacaacgaagaagaagaagag
gaagaggaagaaagtgaggaggaggaggagagctatggtccgcttcttggaccggcatct
cttggtagaggaaggggcagaggaatgatgtggccgccgatgcaactggcacgcggagcc
cggccaatccccgggatgcggccttttgctcctgggatgatgggtgctgatggttttcct
tatggaggtgttgctcctgatggttttggaatgcccgatctctttggtgtgggtccccgt
cctttccctccttacgggtcaaggttctcgggggacttttcaggtcccgcatccggcatg
atgtttcctggacgacccatccaacctggctcagtttttcctaccggtgggtttgggatg
atgatgggtcctggacgtggtccctttatgggtggaatgggccctgcaagagctggccgg
cctgctggaatgcctggaggtcttccacctccaccttctcaaaacctgaataggttagtg
aagagagatcaaaggccgtcgcctggtgcaggatcagaccagggtagggatcaagagtca
atggggcccagtgagggtgctgatcacgacagatcacatcagctaggaccacgggctcat
cacgaaaataacagcttgaggaatgaagagagtgaaagtgaggatgaggctccaaggcgc
tcaaggcacggggaagggaagaagaagcgacgtggtggggatgcagttgttgctattgcc
cccaatcgctag
DBGET
integrated database retrieval system
