KEGG   Rhodamnia argentea (silver malletwood): 115747384
Entry
115747384         CDS       T10595                                 
Name
(RefSeq) splicing factor 3B subunit 1
  KO
K12828  splicing factor 3B subunit 1
Organism
rarg  Rhodamnia argentea (silver malletwood)
Pathway
rarg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rarg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115747384
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rarg03041]
    115747384
   03036 Chromosome and associated proteins [BR:rarg03036]
    115747384
Spliceosome [BR:rarg03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    115747384
 Complex B
    115747384
 Complex C
   U2 SnRNP specific factors
    115747384
Chromosome and associated proteins [BR:rarg03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    115747384
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_ECM29 HEAT_EF3_N Htt_N-HEAT_1 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N UME
Other DBs
NCBI-GeneID: 115747384
NCBI-ProteinID: XP_048128654
UniProt: A0A8B8PX82
LinkDB
Position
11:18387187..18391561
AA seq 1268 aa
MATLDPEIARVQEERKKMEQQLASLSSVTYDTDLYGGTDRDAYVSSIAVNEEEENLEGMD
SEVARKLASYTAPKSLLKEMPRGGEEDDGGLGFKKPQRIIDREDDYRRRRLNRVISPDRH
DAFASGDKTPDVSVRTYADVMREEALKREKEETLKAIAKKKKEEEEAAKAGVAKETEAAP
AQKRRNRWDQSQDDGGAAKKAKAGSDWDMPDSTPGIGRWDATPTPGRVGDATPSVGRRNR
WDETPTPGRLADSDATPGAVTPGATPAGMTWDATPKLAGMATPTPKKQRSRWDETPATMG
SATPMAGATPAAAFTPGVTPVGGVDLATPTPGAINLRGPITPEQYNLLRWEKDIEERNRP
LTDEELDAMFPQEGYKILEPPASYVPIRTPARKLLATPTPLGTPLYQIPEENRGQQFDVP
KEAPGGLPFMKPEDYQHFGALLNEENEEELSPEEQKERKIMKLLLKVKNGTPPQRKTALR
QLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVV
IEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVAS
ALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLKSLVEIIEHGLNDE
NQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLM
DALYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAEYIRTDILPEFFRN
FWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVA
NLGASDIDSRLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVKPYLPQICGTI
KWRLNNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGA
LKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWM
RICFELLDMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAI
AIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDA
LMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEG
MRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPVLEDEQSNVYS
RPELTMFI
NT seq 3807 nt   +upstreamnt  +downstreamnt
atggcgacgctggatcccgagattgcgagggtccaagaagagaggaagaagatggagcag
caattagcctctctcagctccgtcacctacgacaccgacctctatggcggcacggaccgc
gatgcgtacgtcagctctatcgccgtcaacgaagaggaggagaacctcgagggcatggac
tccgaggtcgctcggaagcttgcgtcttacaccgccccaaagtcgctgctgaaggagatg
cctcgcggcggcgaggaggatgacggggggttgggattcaagaagccgcagaggatcatc
gaccgtgaggacgattatcgcaggaggaggctgaaccgggtcatttctcccgatcggcat
gatgcctttgcctcgggggataagactccggacgtgtccgtgaggacttatgcggatgtg
atgcgagaagaggcgttgaagagggaaaaggaggagacgcttaaggctatcgccaagaag
aagaaggaagaagaggaagctgcaaaggccggggtggcgaaggagacagaagctgctcca
gctcagaagcgaaggaacaggtgggaccaatcacaggacgatggtggtgctgcaaagaag
gcaaaagctggttctgactgggatatgcccgattcaacacctggaattgggcgttgggat
gcgacccctacacctggaagagtcggtgatgccacgccttcagtgggtcggagaaaccgg
tgggacgagacccctacgccaggacggctcgcagattcagatgcaactcctggtgctgtg
actcctggagcgactccagctggtatgacttgggatgccacgcccaagctggccggtatg
gccacaccaaccccgaaaaagcagagatcaagatgggatgaaactccagccaccatgggg
agtgctacgccaatggcgggtgctacacctgcagctgctttcacaccaggggtaactcct
gttggaggtgtcgatcttgctacgcctactcccggggcaattaacttgcgggggccaatt
acgcccgagcagtataatttgttgaggtgggagaaggatatcgaggagaggaacaggccg
ttgacggacgaggagcttgatgctatgttccctcaggaggggtataagattttggagcca
ccagcatcttatgtccctattagaacgccagcgaggaagctcttggcaacacctacgcca
ttgggtactccgctctatcaaattccagaagagaatcgtgggcagcagtttgatgttcct
aaggaggcgccaggcggtctacccttcatgaagccagaggattatcagcattttggggca
ctgttgaacgaggagaatgaagaagagctgtctcctgaagaacagaaagagcgtaagatc
atgaaacttctgctgaaggtgaagaatggtacgccaccacagaggaagactgcgcttaga
cagcttacagacaaggcccgagagtttggtgctggacctttgtttaaccgtattctacct
ttgctcatgcaacctactttggaggatcaggaaaggcatctcttggttaaggtgattgat
agggttctgtacaaattggatgaattggtacgtccttacgtgcataagattcttgtcgtt
attgaacctctgttgattgatgaggattactatgcgcgtgttgaggggagagagatcatt
tcgaatttgagcaaggcagctggattggctactatgattgctgctatgcgtccagatatt
gataacattgatgagtatgtgagaaatacaactgctagagctttcagtgttgttgcttct
gctcttggaatacctgctctgttgccattcttgaaagctgtgtgtcagagcaagaaatcc
tggcaagctcgccacactggaatcaagattgttcagcagattgctattttgataggttgt
gctgttctaccacatttgaagtctcttgtcgaaattatagaacatggcctgaatgatgag
aaccagaaggtgagaactattactgcactgtctctggctgctcttgctgaggctgctgcg
ccttacggtattgaaagctttgattcagtgttgaagccactttggaagggtattaggtca
cacaggggaaaggtcttggctgcattcttgaaagcaattgggtttattattcctctgatg
gatgctctctatgctagttactatactaaagaagtcatggtcattcttatccgtgagttc
cagtctccagatgaagaaatgaagaagatagtgcttaaagtggtaaaacagtgtgtgagt
accgagggtgttgaggctgaatacatacgaactgacattcttccagagttcttcaggaat
ttctgggttagaaggatggctttggataggagaaactataagcagctagtggaaactact
gtggagatagctaataaagtcggtgttgccgacatagttgggagaattgtggaggatctg
aaggatgagagtgagccatatcggcgaatggtcatggaaacaatagagaaggttgttgca
aacctgggtgcctctgatattgattctcggctggaagagcttctcattgatggtatcctg
tacgcattccaagagcagactagtgatgatgccaatgtaatgcttaatggctttggtgct
gtggtgaatgctcttgggcaaagagtgaagccatatctcccacagatttgtggtacgata
aagtggcgattaaacaacaagagcgcaaaggtgagacaacaagctgcagatcttatttcc
aggattgctgttgtcatgaagcagtgtcaggaggaacaactgatgggtcatcttggtgtt
gttctgtacgagtacttgggagaagagtaccctgaagtcttgggctccatattgggtgct
ttgaaagctattgttaatgtgattggtatgacaaaaatgacgcctcccataaaagatctg
cttcccaggctgacacccattctgaagaacagacatgagaaggtccaggagaactgtatt
gaccttgttggtcgtattgctgatcgtggggctgaatttgttccagcaagggagtggatg
aggatatgttttgagcttcttgatatgcttaaagcccacaagaagggtattcggcgagcg
acggtgaacacctttggttatattgctaaagccattggacctcaagatgtccttgcaacc
cttttgaacaatctcaaagttcaggagcgtcagaaccgtgtatgcacaaccgttgccatt
gctatagttgcagagacatgttctcctttcacagttctgccggctttgatgaatgagtat
cgtgtgcctgagctcaacgtgcagaatggtgttctgaaatccctttcctttttgttcgag
tacattggtgaaatggggaaggactacatatatgcagtgactccactacttgaagatgca
ctcatggatagagatttggtccacaggcagactgccgcttctgccgtaaagcatatggct
ttgggagttgctgggttgggttgtgaggatgcacttgtccacttgctcaactatgtctgg
ccaaacatattcgagacttcccctcatgtcataaatgccgttatggaagccattgaaggc
atgagggtggccctgggtgctgctgttgtgctaaactactgcctccaggggctgttccat
cctgcaaggaaggtcagggaagtatactggaagatctacaactcgctatatattggagcc
caggatgctcttgttgcagcttatcccgtgctggaggatgagcagagcaacgtatatagc
cgaccagagttaacaatgttcatctga

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