Rhodamnia argentea (silver malletwood): 115750374
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Entry
115750374 CDS
T10595
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115750374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115750374
03041 Spliceosome [BR:
rarg03041
]
115750374
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115750374
Spliceosome [BR:
rarg03041
]
Complex B
Other components
Prp19-related factors
115750374
Complex C
115750374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_12
TPR_15
TPR_2
ARM_TT21_C
ARM_TT21
NRDE-2
Motif
Other DBs
NCBI-GeneID:
115750374
NCBI-ProteinID:
XP_048132408
UniProt:
A0A8B8Q8T2
LinkDB
All DBs
Position
3:9497401..9503192
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AA seq
922 aa
AA seq
DB search
MSIPKELYPSQDDLLYEEELLRNPFSLKLWWRYLIARSGSPFKKRFIIYERALKALPGSY
KLWHAYLRERLQIVRNLPITHSQYETLNNTFERALVTMHKMPRIWIMYLLTLTEQKLITR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQRGMPIETPLRVYRRYLKYDPSHIEDFIEFL
VNSSLWQEAAERLASVLNDDQFFSIKGKTKHRLWLELCDLLTKHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRNLHEKARDIFEEGMKTVITVRDFSVIFDAYAQFEESML
AYKMENMDLSDEDEDEEDGDGEDGVQENGSEEEEDIRLDVNLSVAKFEKKILDGFWLHDD
KDVDLRLARLENLMVRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPSKQILTYTEAVRT
VDPMKAVGKPHTLWVAFAKLYEAHKDIANARVIFDKAVQVNYKAVDHLASIWCEWAEMEL
RHNNFKKALELMRRATAEPSVEVKRRVAADGNEPVQIKLHKSLRLWTFYVDLEESLGTLE
STRAVYERILDLRIATPQIIINYAVLLEDNKYFEDAFKVYERGVKIFKYPHVKDVWVTYL
SKFVRRYGKTKLERSRELFEHAIEMTPSDQVKPLYLQYAKLEEEYGLAKRAMKVYDQATK
AVPSNEKLAMYEIYIARAAEIFGVPRTREIYEQAIENGGLPDKDGKAMCLKYAELEKSLG
EIDRARGIYVYASQFADPRSDVDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHF
ILPEYVMQKDQKLDLDDARDKLKQAGVSEDEMAALERQLVPSANDVATKEGSRKVGFVSA
GVESQADGGIRSNVNQEDIELPDESDSEEEDRVEIAQKDVPSAVFGGLVRKREDSEKDEE
GKDGESRLGALERIKRLKKASG
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatacctaaggagctatacccatcgcaagacgacctcctctacgaggaggagctc
ctgcgaaaccccttcagcctgaagctgtggtggcgctacttgattgcgaggtccggctcc
cctttcaagaagcgcttcatcatctacgagcgtgccctaaaggccctccccggcagctac
aagctgtggcacgcgtatctccgcgaacgcctccagattgtccgtaacttgcccatcacg
cactcccagtacgagaccctgaacaacacgttcgagagggcgctggtgacgatgcacaag
atgccccggatttggatcatgtatctgctgacgctcacggagcagaagctgatcacccgc
acgcggaggacgttcgaccgggcgctctgtgcgctcccggtcacgcagcatgatcgtatc
tgggagccgtatctggtgtttgtcagccagaggggcatgccgatcgagactcctctcagg
gtttataggaggtacttgaagtatgacccctctcatattgaggatttcattgagttcttg
gttaattctagtctttggcaagaggcagcggagaggctggcgtcggtgctgaacgacgat
cagtttttctccattaaggggaagaccaagcataggttgtggctcgagttgtgcgatttg
ctcacaaagcatgctacagaggtttctggtcttaatgttgacgcaattataaggggtggg
attaggaagttcactgacgaggtcgggcggttgtggacatcgctcgctgaatactatatc
aggaggaatttacatgagaaggcaagggacatatttgaggagggtatgaagacggtgatt
accgtgagagatttcagtgtgatatttgatgcttatgcgcagtttgaggagagcatgctc
gcgtacaagatggaaaacatggatctgagtgatgaggatgaggatgaggaagacggagat
ggagaggatggggtacaggagaacgggtctgaagaggaggaagatatcaggctggatgtg
aatttgtccgtggccaagtttgagaagaagatccttgatgggttctggttacatgatgat
aaggatgtggatttgcggttagctcgattggagaatttgatggtgcgcaggccagaatta
gcaaatagtgttctcttgcgacaaaatccccataacgtggagcaatggcacaggagggta
aagctgtttgagggtaatccctccaagcagattcttacatacacggaagccgtgaggact
gtagatccgatgaaagctgttggaaagcctcacacgctttgggtagcctttgctaagtta
tatgaggcccacaaagatattgctaatgcgagagtgatatttgacaaagcagtgcaggtc
aactacaaggctgttgatcatttggccagtatttggtgtgagtgggccgagatggaattg
aggcataacaacttcaaaaaggcacttgagttgatgagaagggctactgcggaaccgtca
gttgaggtcaaaagaagagtggctgctgatggaaatgaaccagttcagataaagctgcac
aaatcattgagactgtggacattttatgtggatttggaggagagcctgggtaccttggag
tccacacgtgcagtctatgagcgtattttagatttgagaatagccactccacagataata
atcaattatgcagttctgttggaagataacaagtatttcgaagatgcatttaaggtatat
gaaagaggcgtcaagatatttaagtatccccacgtgaaagatgtatgggtcacttatctc
tctaagttcgtaaggagatatggaaagacgaaactggagcggtcaagagagttgtttgag
cacgctattgaaatgaccccttctgatcaagtaaagcctctataccttcaatacgcgaaa
ttggaagaggagtatggtcttgcgaagagggcaatgaaggtgtatgatcaagccactaag
gccgtgcctagcaatgagaagttggcaatgtacgaaatttacatagcacgagcagcggag
atattcggtgtcccaagaacaagagagatctacgagcaagcgatagaaaatgggggtctt
cctgacaaagatgggaaggcgatgtgcttgaaatatgccgagctcgagaaaagcctgggt
gaaatagatcgtgctcgtggaatttatgtgtatgcatcccaattcgctgacccaagatct
gatgttgatttttggaacaagtggcatgaatttgaggtgcagcacgggaatgaagacacc
ttccgggaaatgcttcgtattaagcgcagtgtttctgcaagctatagccagacacacttc
attctgcccgagtatgtcatgcaaaaagaccagaagctggatcttgatgatgcaagagac
aaattgaaacaggctggtgtttccgaggatgagatggccgctctcgagaggcagcttgtg
ccttcagccaacgacgttgccacgaaagaagggagccgaaaagttggctttgtgagtgct
ggagtagaatctcaggcagatggagggataagaagtaatgtgaaccaagaggacatcgaa
ctgccggatgaaagtgactcggaagaagaggatagagttgaaatcgcgcagaaggacgtg
ccatcggcagttttcggagggttggttcggaagagggaagactccgaaaaggatgaggaa
ggcaaagatggtgagagccgtcttggcgccctggagagaatcaaaagactgaaaaaagca
tccggctga
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