Rhodamnia argentea (silver malletwood): 115750413
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Entry
115750413 CDS
T10595
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
rarg Rhodamnia argentea (silver malletwood)
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
rarg04812
]
115750413
Cytoskeleton proteins [BR:
rarg04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
115750413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Katanin_con80
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_WDR41
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
eIF2A
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_VPS8
Beta-prop_ACSF4
Beta-prop_IP5PC_F
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
115750413
NCBI-ProteinID:
XP_030543605
UniProt:
A0A8B8Q926
LinkDB
All DBs
Position
3:complement(9723072..9732150)
Genome browser
AA seq
1024 aa
AA seq
DB search
MSKRGYKLQEFVAHPSNVNCLSIGKKACRLFLTGGDDYKVNLWAVGKPNSLMSLCGHTNP
VESVAFDSAEVLVLAGASSGVIKLWDLEEAKMVRGLTGHRSNCTAMEFHPFGEFFASGSA
DTNLKIWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSGGYDNVVKVWDLTAGKLLHDF
KFHENHIRSMDFHPLEFLLATGSADRTVKFWDLETFELIGSSRPEATGVRAITFHPDGRT
LFCGLEDSLKVYSWEPVICHDAVDMGWSALADICIHDGKFLGCSYYQNSVGVWVADASLI
EPYGANLKPQQKDFGDNEIEHQESRSSAKVGTTVRSTSIGRCASPDYDTKEIKNIYVDTA
SGNPVSSQLVGTNNSVKEIQSLDSEDTPNLTLQRQGLVTETSDNLSAQVPTKTYTAPKAV
SRDSPDGKDSSRRESITFSRTKPGMLLKPAHSRRLSSTKYDVDRLSACAETGVLSSGKSG
SESLVDSFSKKLAPEDGARDGCEDNHSSIKNVSEETEKVPPLQTPKTEKCDQPVSFKEGI
NSVKFVNGVAVVPGRTRTLVEKFEKRDKMNSIEDQSINTPPGMSALDKTPPSLAENVEKS
DRLNILEQKATSMSSRIVATEDRTPVTLVHDLRKDGFNGTADQSTVMAPQSELSADESSK
TPPLPVEDLKIHHGLNVSEDKASSLSSETVSEEDSKRSTLIRNFRRGDRYKSTEGRSPVM
APQRKLPTDEASKTSALPIEDVEIKGGLNASEDKATSFSSRASPGDDRAPSTLVRSVRRR
DKFRNTDDTNTVMVRQRGLSTDEASIVSVERVERRQLSNYIENPLNNVAPQPIPPTTTSG
EHHFMGRESDSVNHEDVTEVLLGNHEVLLSTLRSRLTKLQVVRHFFERKDIKGAINALRR
LPDHSVQADVISILMEKMEMLNLGLFSCLLPVLVGLLDSKVERHTCVSLEMLLKLVAVFG
SVVHSTVSAPPTVGVDLHAEQRLECCTQCFTELQKIQKVLPLLVRRGGLIAKSAQELNLV
LQQC
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcggggttacaagctgcaggaatttgtagcccatccgtcgaatgtcaactgt
ctcagtatcggaaagaaggcgtgccggctttttcttactggtggagatgactacaaagtc
aatctatgggccgttggcaaaccgaattccttaatgagcctttgtggtcatacaaatcct
gtagaatccgtagcctttgattctgcagaagtgttggtgcttgctggagcttcttctggt
gtcattaagctgtgggacttggaagaggcaaagatggttcgtggtcttactggacacaga
tccaattgcaccgctatggaattccatccctttggagaattctttgcatctggttctgcc
gacacaaacctaaagatctgggatatcagaaaaaaaggatgtatacacacatacaagggt
catactcgaggcattagcaccatcagattcactcctgatggtcgctgggttgtttcaggg
ggatatgataatgttgtgaaggtgtgggatctaactgctggaaagcttttgcatgatttt
aagttccatgaaaatcatatccgatctatggatttccatcccctggagttcctccttgct
acaggttcggcagatagaactgttaaattctgggacttggaaacatttgaactaattgga
tcttccagacctgaggccacaggagtacgtgcaatcaccttccatcctgatgggaggacc
ttattctgtggtttggaggatagcttaaaggtttactcctgggagcctgtaatctgccat
gatgctgttgacatgggatggtcagcgcttgctgatatttgtattcatgacggaaaattc
ttgggttgctcatactaccaaaattctgttggtgtttgggtagcggatgcatcacttatt
gagccttatggagctaatttaaagcctcagcagaaggattttggggataatgaaattgaa
caccaagaaagtcgttcctcagctaaagtagggaccaccgtaagatcgacttcaatcgga
cgctgcgcctctccggactatgacaccaaagagataaagaatatatatgtggatactgct
agtggaaatcctgtttcttcacagcttgttggtaccaataactctgtgaaagagattcaa
tcgctggattctgaggacacccctaatttgacactacagaggcagggcttggtaacagaa
acatcagataacttaagtgcgcaggttcctactaaaacttataccgcacctaaagctgtt
agtagggacagtcctgatggaaaagactcatctcgaagagaatctattactttttcaagg
actaagccgggcatgttgctcaagcctgctcattcaaggaggctgtcgagtaccaaatat
gatgtcgacaggttatcagcatgtgctgaaactggagtgcttagcagtggaaaaagtggt
tctgaaagtcttgtagattcattttcgaagaaacttgcacctgaagatggagcaagagat
ggctgtgaagacaatcattcgagtatcaagaatgtctctgaggaaactgaaaaagtgcca
ccactgcagacacctaaaacagaaaagtgtgaccaacctgtcagtttcaaagaaggaatc
aactctgtcaagtttgtcaatggagttgcagttgtgccaggccgaacacgcactttagtt
gagaagtttgaaaaaagagataaaatgaacagtattgaagatcaatcaatcaatacacct
cctggaatgtctgcattggataaaacccctccctctctggcagaaaacgtggaaaagagt
gacagattaaacatcctcgaacaaaaggcaacaagtatgtcttctcgtatcgtagccact
gaggatagaacacctgttactcttgttcacgacttaagaaaagatggatttaatggtact
gcagatcagtcaactgtaatggctcctcaaagtgaattatcagctgatgaatcaagtaaa
actcctccattgccggttgaggatttgaaaattcatcatggattgaatgtcagtgaagat
aaggcaagtagtttgtcttctgagacagtatcagaggaggatagcaaacgctctactctt
attcgcaacttccgcaggggagacagatacaaaagtactgaaggtcgatcccctgtaatg
gctcctcaaagaaaactaccaacagatgaagcaagcaaaacttctgctttgccgattgag
gatgtggaaatcaaaggtggattgaacgcgagtgaagataaggcaactagtttctcttct
cgtgcttcaccaggggacgatagagcaccctccactcttgttcgcagtgttcgcagaaga
gacaaatttagaaatactgatgatacaaacactgtaatggttcgtcaaagaggattatcg
acagatgaagcatcaattgtttcggtcgagagggttgaaaggagacaattatctaactac
atagagaacccgctaaataatgtggctcctcaacctataccgccaacaacaacgagtggg
gaacatcattttatgggaagggagtcagactcggttaaccacgaggatgtcactgaagtt
ctactgggaaatcatgaagttctcttaagtactctccgttctcgcttgacaaaactacag
gtagtccggcatttctttgaaaggaaagatataaaaggtgctatcaatgccttgaggagg
ttgccagatcattctgtgcaagcagatgtaatcagcattcttatggaaaaaatggagatg
ctgaacttaggtttattttcttgcttgcttcccgtgcttgtgggtttactggatagcaaa
gtagaaaggcacacatgtgtgtctctcgagatgctactaaagcttgtagcagtttttggt
tcagtagttcactccacagtttctgcacctccaactgttggtgttgatctacatgctgag
caaaggctagagtgctgcacccagtgttttacagagctgcaaaagatccaaaaagttctc
cctttacttgtgaggagaggtggtttaattgcaaaaagtgctcaagaattgaatttagtc
cttcaacaatgctaa
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