Rhodamnia argentea (silver malletwood): 115750860
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Entry
115750860 CDS
T10595
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg04120
Ubiquitin mediated proteolysis
rarg04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115750860
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
115750860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rarg04121
]
115750860
Enzymes [BR:
rarg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115750860
Ubiquitin system [BR:
rarg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115750860
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
115750860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
zf-C3HC4_2
WD40_MABP1-WDR62_1st
EIF3I
Beta-prop_TEP1_C
Beta-prop_EML
WD40_RFWD3
zf-C3HC4
Beta-prop_HPS5
WD40_like
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
zf-C3HC4_4
zf-RING_5
YbfN
U-box
Beta-prop_SPT8
zf-CCCH_6
Beta-prop_IFT122_2nd
zf-RING_10
YpoC
DUF1664
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
115750860
NCBI-ProteinID:
XP_030544321
UniProt:
A0A8B8QB09
LinkDB
All DBs
Position
7:4456270..4463360
Genome browser
AA seq
683 aa
AA seq
DB search
MEEVSTGALVPAVKPEPVSSSATVAPPPPPPEVAGDTTAAEVSTTEQLDRDFLCPICMQV
IKDAFLTSCGHSFCYMCIITHLRNKSDCPCCGHFLNNNQIFPNFMLDKLLKKTSARQVSK
NASPIEHFRVALQQGCQVSIKELDSLLVLLAEKKRKMEQEEAERNMQILLDFLHCLRKQK
VEELKEIQNDLQYIKEDINAVERHRIELYRARDRYSVKLRMLGDDHSMRKPWPSSMEKTT
SGFTSSNISARGNLSSGSLQSKKMEAKAQVSSHGMQRKDALSGSDSQHMNQSSLSVIRKK
RVHAQFTDLQECYLQKRRQLANQPHFQDEKDINVIHREGYTAGLAHFQSVLSTFTRYSRL
RVIAELRHEDLFHSANIVSRFCCSIEFDRDDELFATAGVSRRIKVFDFSTVVNEPTDVHC
PVVEMTTRSKLSCLSWNKYAKNHIASSDYEGIVTVWDVDTRQSLMEYEEHEKRAWSVDFS
RTEPSMLVSGSDDCKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYVAVGSADHHIHY
YDLRNISQPLHVFMGHRKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFKGHTNE
KNFVGLTVNSEYIACGSETNEVYVYHKEISRHVTSHKFGSPDPDDPDDDAGSYFISAVCW
KSDSPTMLTANSQGTIKVLVLAA
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagtgtccaccggggctctggtcccggcggtgaagcctgagccggtctcgtcg
tcggcgaccgtggctcctcctccgccgccgccggaggtcgccggggacaccaccgccgcg
gaggtctccaccaccgagcagctcgacagggacttcctgtgcccaatttgcatgcaggtg
atcaaggacgcgttcctgacgtcgtgcgggcacagcttctgctacatgtgcatcatcact
cacctccgcaacaagagcgattgcccctgctgtggccatttcctcaacaacaaccagatt
ttccccaacttcatgctcgacaagctattgaagaagacttctgctcggcaagtatcaaag
aatgcatcacccattgaacattttcgcgtggcgctgcaacagggttgtcaagtgtcaata
aaggagctagatagccttctcgtgcttcttgcagagaagaagagaaaaatggaacaagag
gaagctgagagaaatatgcaaattcttcttgacttcttgcattgcttgaggaagcaaaaa
gttgaagagttgaaagagatacaaaatgatctccagtatatcaaggaggatattaatgct
gtggagagacatagaatagagttgtatcgggcaagagacaggtactcggtgaagctgagg
atgcttggagatgatcatagcatgagaaagccgtggccttcatcaatggagaaaaccact
agtggctttacctccagtaacatcagcgccagaggaaatttgtcctctggtagtctacag
agcaagaaaatggaagcaaaggctcaagtgagctcccatggaatgcaaagaaaggatgct
ctcagtgggtcagactcacaacacatgaatcaatccagtctttcggtgataaggaaaaag
cgagttcatgcacagtttactgatctccaagagtgttatctacaaaagcgacgtcagttg
gcaaatcaaccacatttccaggatgaaaaggacataaatgtcatacatagggagggttat
actgcaggtcttgctcattttcaatccgtattgtccacctttacgcggtacagtcgtcta
cgggtaattgctgaactaaggcatgaggatttgtttcactcagctaatatagtttcgaga
ttctgctgcagcattgaatttgatcgagatgacgagctatttgccactgccggagtttcc
cgtcgcataaaggtttttgacttctcaacagttgtgaatgagccaactgatgtgcactgt
cctgtggttgagatgaccacaaggtccaaacttagctgcttgagctggaataagtatgcc
aaaaaccatatagcaagcagtgactacgagggaatagtgactgtctgggatgtggatacc
cggcagagtttgatggaatatgaagaacatgaaaaacgagcatggagtgttgatttctca
aggacagagccttcgatgcttgtatctggtagcgatgattgcaaggtcaaggtttggtgc
acacgacaggaagctagcgtgctaaacattgacatgaaagcaaatatatgctgtgtcaag
tataatcccggatctagcaactacgtagcggttggttcagctgatcaccatatccattat
tatgacttgcgcaatatcagccaaccgctccatgtatttatgggacaccgtaaagctgtt
tcatatgtgaaattcttgtccaacaacgagcttgcttctgcatccactgacagcacatta
cggctatgggatgtaaaggacaatttaccggttagaacgtttaaaggccacacgaacgag
aagaactttgtgggtctaacggtaaatagcgaatacatagcgtgcggcagcgaaactaac
gaagtctacgtctaccacaaggaaatatcaaggcacgtcacttcacataaatttggttcg
ccggatcccgatgatcccgatgatgatgcgggatcttacttcattagcgccgtgtgctgg
aaaagcgatagcccaaccatgctaactgctaacagccagggaacaatcaaagtattggta
ctcgccgcttga
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