Rhodamnia argentea (silver malletwood): 115751503
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Entry
115751503 CDS
T10595
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115751503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115751503
03012 Translation factors [BR:
rarg03012
]
115751503
Enzymes [BR:
rarg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115751503
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115751503
Translation factors [BR:
rarg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115751503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
AAA_16
AAA_23
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
115751503
NCBI-ProteinID:
XP_030545290
UniProt:
A0A8B8QDU2
LinkDB
All DBs
Position
5:5034384..5044148
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AA seq
1148 aa
AA seq
DB search
MPNIMLRCALLGHITKSMPCPFVNKQGRVCNSLLGLFSEATLCEGGFFATRRWFCGYAAE
QFSDDEYEVDFEGHKASSSVANIDEWKWKLSLLSRSEKDQEIVSRDKRDRRDYEQISNLA
KRMGLYSEIYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLGLQRRVEGLLQEHLDRIQL
RVGKEGKEASVVKSADQVEEINPDDNPDLFLDGSVMEKVLQRRSLRMRNMQRAWQESPEG
RKMLDFRKSLPAFREKDRLLQAIARNQVIVISGETGCGKTTQLPQYVLESEIESGRGAFC
SIICTQPRRISAMAVAERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLL
SDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSTYFGG
APTIHIPGFTYPVTAHFLEDVLEITGYKLTSFNQLDDYGQEKLWKTQRQLAPRKKKNQIT
ALVEDVLTKSSFENYSSRVRDSLSCWTPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWE
DISCLRDQLKAHPLLGDPNRVLLITCHGSMATSEQKQIFERPPFNVRKIVLATNMAEASI
TINDIVFVVDCGKAKETTYDALNNTPCLLPTWISQASAKQRRGRAGRVQPGECYHLYPRC
VYEAFAEYQLPELLRTPLNSLCLQIKSLQVASIGEFLSAALQPPEPLTVQNAVDFLKMIG
ALDEKENLTDLGKFLSVLPVDPKLGKMLIMGAIFRCFDPILTIVSALSVRDPFLLPQDKK
ELAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSSQTLQAIHSLRKQ
FSFILKDAGLVEADSSTNNKLSHNQPLVRAIICCGLFPGVASVVHRETSMSFKTMDDGMV
LLYANSVNANYQTIPYPWLVFGEKIKVNTVFLRDSTGVSDSILMLFGGALSHGVQVGHLK
MLEGYIDFFMDPSLAECYVKLKEELDKLLQKKLQDPSLDIHKEAKYLMLAVQELVSGDQC
EGRFVFGRESKKPREPTDGNKFTRDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRAL
VEFKGMQFVGKPKKNKQLAEREAAIEALAWLTHTSDDTRDEDDKSPLDVTDNMLKLLGKR
RRSKRNPR
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctaatatcatgctaagatgtgctctcctgggacacatcaccaagtctatgccctgc
ccttttgtcaacaagcagggcagggtctgcaactccttgctcggtctgttttctgaggca
acgctttgtgaagggggattctttgcgacgaggcgatggttttgtggctatgccgcagag
cagttctcggacgatgagtacgaagtcgacttcgagggccacaaggcatcatcttcagtt
gccaacattgatgagtggaagtggaagctcagcttgctctcacgcagcgaaaaggaccag
gaaattgtatctcgagataaaagagatagaagagactatgagcagatttctaatcttgcg
aaaaggatggggctttacagcgaaatatatggaaaagtagttgttgctagcaaggttcct
ctcccaaactacaggccagatctcgatgataagcggcctcaaagagaggtggttatccct
ctaggcctgcaaaggagagtagagggcttgcttcaggaacatcttgataggatccaatta
cgagttggtaaagaaggcaaggaagcaagtgttgttaagtcagccgatcaggttgaagag
atcaatccagatgacaatccagacttatttcttgatggttctgtcatggaaaaggtactt
caaaggagaagcttgcggatgcgtaacatgcaaagagcttggcaggagtcaccggagggc
aggaaaatgctggactttcggaaatctctacctgcattcagggagaaggacaggctgctt
caggcaatagcgaggaatcaggtcattgtaatatctggggagactggatgtggcaagacc
actcaacttcctcaatatgtcctagagtcagaaatagaatctggtaggggagcattttgc
agcataatctgcacgcagcctagacgaatatccgctatggcagttgccgaaagagtgtct
gctgagagaggagagcctcttggtgaaacagttggctataaagttcggctagaagggatg
aagggaaagaatacacatcttctcttctgtaccagtggaattctactacgacgattgctg
agtgatcggaacctgaatggtataacccatgtatttgtagatgaaattcacgagagaggc
atgaatgaagacttcctcttgattgtcctaaaggatcttcttccacgccgtcgagatttg
agattgatattgatgagtgccacattgaatgcagagttattctccacctattttggaggt
gccccaactattcatataccgggattcacatatccagtgacagctcattttttagaagat
gtactggaaattactggatacaagttgacctcattcaatcaattagatgactatggtcaa
gagaaattgtggaaaacgcagagacagctagcaccacggaaaaagaaaaaccagattact
gctcttgtcgaggatgttcttaccaaatcaagttttgaaaattacagctctagagtgcgt
gattctttatcatgttggacacccgactgcataggattcaatcttattgaggcagtgtta
tgccacatatgtcgaaaagaaagaccaggtgctgtactagttttcatgactggatgggag
gatataagctgcttaagggatcaactcaaagctcatcctcttcttggagaccctaacagg
gttctgctcataacatgtcatggttcaatggcaacatctgaacagaaacaaatattcgag
agaccaccattcaatgtgcgtaaaatagtccttgccaccaatatggccgaagcgagtatt
acaatcaatgacattgtatttgttgttgattgtggaaaagcgaaagagaccacgtatgat
gcattgaataatacaccgtgtctactacccacttggatatcacaagcatctgccaaacag
agaaggggtagagcaggccgtgtacagccaggcgaatgttaccacttatatccccgctgt
gtttatgaagcatttgctgagtatcagcttccggaacttttgagaactcctctgaactct
ctttgcctgcaaataaaaagcttgcaggttgccagtataggggaattcctgtcagctgca
ctacagccaccagaaccacttactgtccaaaatgctgttgactttttgaaaatgattggg
gcattggacgagaaggaaaatcttacggatcttgggaagtttttgtcagttcttccagtt
gatccgaagctggggaaaatgctaattatgggtgccatttttcgttgttttgatcccatt
cttaccatagtatcagcactcagtgtgagagatcctttccttttgcctcaagacaaaaag
gagttagcagggacagcaaaatcaaggttctctgcaaaggactacagtgaccacatggct
cttgttcgtgcatatgaaggatggaaggatgcagagagagaaggttcatcttatgagtac
tgctggaggaatttcctctcttcccagacactgcaagccatccattctcttaggaagcag
tttagtttcatattaaaagatgctggcttggtagaagctgattcaagtactaataacaaa
ttaagccacaatcaaccacttgtccgtgcaatcatatgctgtggtctctttcctggtgtt
gcgtctgtagttcacagggagacgtccatgtctttcaaaacaatggatgatggcatggtg
ctactttacgcgaactctgtcaatgcgaactaccagacaattccttatccatggctagtg
tttggagaaaagatcaaagtgaatactgtcttcttacgtgattcaactggtgtatctgat
tcgatattgatgctattcggcggtgctctaagccatggagtacaggttgggcatctgaaa
atgctggaagggtatattgactttttcatggatccgagtttggcggagtgctatgtgaag
cttaaggaggagcttgacaagcttcttcaaaagaagcttcaggatcccagcctggacatt
cacaaggaagcaaaatatttaatgcttgctgtgcaagagctcgtttctggggaccaatgc
gaagggagatttgtgtttggccgagaaagcaagaagcccagggaacctaccgatggcaac
aaattcacgagagacggaacaaatcctaagagcttgctccaaactctgctgatgagagca
ggccactctcctccaaaatacaaaacgaagcacctgaagacaaacgagtttagggcactg
gtggagttcaagggaatgcaatttgtcgggaagcccaagaaaaataagcagcttgcggag
agggaggctgctatagaagcattagcgtggttaactcacacttcagatgatacccgtgat
gaagatgacaaatccccacttgatgtcacagataacatgctgaaactccttggcaaacgg
agaagatcaaagagaaatcctcgttga
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