Rhodamnia argentea (silver malletwood): 115752024
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Entry
115752024 CDS
T10595
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115752024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rarg03041
]
115752024
Spliceosome [BR:
rarg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
115752024
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
SabA_adhesion
Motif
Other DBs
NCBI-GeneID:
115752024
NCBI-ProteinID:
XP_030545909
UniProt:
A0A8B8QFF9
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Position
5:3516262..3521076
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AA seq
893 aa
AA seq
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MERSSHRAREERDHKHRSRESDEKRSSRDDKHRDSDHHHHQHLHRKSKRGDRESSHDRER
SHDSRGGGGGDHDRDGDFRRERSRDLGDEREGSRDRESKRERDYESRREREGSRDRAKYG
EARRERHDEYSRAREGSVERRHKRKERERSEDGGIDGEDTVDRVSETEKKQRRRFEDANG
DRREERRERRKFGDKVNQEGLEDGNRLNVSSNVTVNVNEVKVKEVGNGRGDGTANGGVFT
ANGAAPESPTMTSRTLPSSTLTSTHPFPTKVSSISTTTENKGVSITGSHEVPGKTSTDGT
SSAAGKSGSLSLDALAKAKKALQMQKELSEKLKKIPLLNKSANSVSDGTQVPKEGTDASP
LASAKPLSTGFTSSSSSFPTADAASSVNPPTSGVPTASGLLSVPNYEAVKRAQELAAKMG
FRQDPQFAPLINLFPGQVAADLSLPQKPTKAPVLRLDALGREIDEHGNLVNISKPSNLST
LKVNINKQKKDAFQILKPDLDIDPESNPHFDERMGINKTKLLRPKRMSFLFVEEGKWSKE
AEIMKLKSQFGEARAKEQKAKQAQLAKAKSAPDINPNLIEVSERVVTKEKPKDMIPEIEW
WDLPLLQAGNYGEVIDGIIADDKLKMDKITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQ
KKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEREIRAAAA
EREQAHVDRNIARKLTPAERREKKEKKLFDDPSTLETIVSVYRVNDLSHKQTRFKIDVNA
QENRLTGCAVISDGISVVVVEGGSKSIKRYGKLMLRRINWAAAVNEEDEEEDDSEEKPVN
KCVLVWQGSVAKASFNRFTVHECITEAAARKVFSDAGVGHYWDLAVNFSDDQM
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggagagatcgagccatcgcgccagggaagagagggaccacaagcaccggagccgtgaa
tccgatgagaagcgctcctcgcgcgacgacaagcaccgcgactccgatcaccaccaccac
cagcacctccaccgcaagtccaagcgcggagatcgggagagctctcacgaccgcgagagg
tcccacgactcccgcggcggcggcggcggcgaccacgatcgcgacggcgacttccgtcgc
gagaggtcgcgcgacttgggggacgagagggaaggcagcagggacagggagagcaagcgg
gagagggattacgagtcgaggagagagagagaaggcagccgggatagggccaagtacggg
gaagcgaggcgcgagaggcacgatgagtattcgcgcgcgagggaggggtcggtggagagg
aggcacaagaggaaagagcgagagaggagtgaggacggcgggattgatggagaggatacg
gtagatagggtttccgagacggagaaaaagcagaggagacggttcgaggatgcgaatggt
gatcggagggaggagaggagagagcggaggaagttcggggataaggtgaatcaggagggt
ttagaggacggaaaccgcctgaatgtgagttcaaatgttactgttaatgtgaatgaggtt
aaggtgaaggaagtcggtaatggtcggggtgacggcactgccaatggcggtgtattcact
gcaaatggtgcggctcctgaatcacccaccatgacatcaaggactttgcctagctccact
ctaacctctactcatcccttccctaccaaggtatcttcaatttctaccacaactgaaaat
aagggagttagtattaccggatctcatgaggttcctggaaaaactagtacagatgggaca
tcttcagcagctggaaaaagtggaagtttatcccttgatgctttagcaaaagctaagaaa
gctttacaaatgcagaaggaattgtcagaaaagctgaagaaaattcctttgctaaacaaa
agcgcaaattcagtatcagatggtacccaggtgccaaaggaggggacggatgcctctcct
ttggcttctgctaagcctttatcaactggtttcacgtccagttcatcgtccttccctact
gctgatgctgcatcctctgtgaaccctcctaccagtggtgttccaactgcttctggtttg
ttaagtgtacccaactatgaagctgtaaaacgagcgcaggagcttgcagcaaagatggga
tttcgccaggatccacagtttgctcctctcatcaatttatttccagggcaagtggcagct
gatctatctctgccccaaaagcctaccaaggccccagtcttacgtctggatgcacttggc
agagagatagatgaacatggaaatctagtgaatatttcaaaaccaagcaacctcagcaca
ctgaaggttaacatcaacaaacaaaagaaggatgccttccaaattctaaaaccagatctg
gatattgatcctgaatcgaatcctcattttgatgaaaggatgggtatcaataaaaccaaa
cttctcagaccgaagagaatgagttttctatttgttgaagaaggcaaatggtcaaaagaa
gcggagatcatgaagttaaagagtcaatttggagaagctcgggcaaaggaacagaaagct
aagcaagcccaattggcaaaggcaaagtcagcacctgatattaatcctaatttgattgag
gtgtcagaaagagtcgttaccaaggaaaaaccaaaagacatgattcctgaaattgagtgg
tgggatttgcctctcctgcaagctggtaactatggtgaagtaattgatggcatcattgct
gatgataaactgaagatggacaagatcactatatatgtggaacaccctcgtcctattgag
cccccagcagagcctgcccctccaccacctcaaccgttaaagttgaccaagaaggaacag
aaaaaacttcgtacacaacgtcggttagccagggaaaaggataggcaagagatgattaga
cagggcctgatagaaccaccgaaaccgaaagtcaagatgagcaatttaatgaaagttctt
ggttctgaagccactcaagatcccactcggcttgaaagggaaattcgtgctgcagctgct
gagcgtgaacaagctcatgtggacaggaacattgctcgtaagctaactcctgctgagcgg
agggagaagaaagagaaaaagctctttgatgaccccagcacactggaaactattgtctct
gtctacagggttaatgatctctcacacaagcagacccgattcaaaatcgatgtcaatgct
caagagaaccggttgacgggatgtgcagtgatatccgatgggataagtgttgtcgttgtt
gaaggtggaagcaagtctatcaagagatatggcaaactaatgctgcggcgaataaattgg
gctgctgctgtgaatgaggaggatgaagaggaagatgacagtgaggagaaaccagtgaat
aagtgtgtattagtgtggcaaggaagtgttgcaaaagcaagcttcaataggttcaccgtt
cacgagtgcatcactgaagctgctgccagaaaggtcttctctgatgccggtgtgggtcat
tactgggatcttgctgtcaacttttcggacgatcagatgtaa
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