Rhodamnia argentea (silver malletwood): 115752028
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Entry
115752028 CDS
T10595
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03022
Basal transcription factors
rarg03420
Nucleotide excision repair
Brite
Enzymes [BR:
rarg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115752028
Transcription machinery [BR:
rarg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115752028
Chromosome and associated proteins [BR:
rarg03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
115752028
DNA repair and recombination proteins [BR:
rarg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115752028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
115752028
NCBI-ProteinID:
XP_030545910
UniProt:
A0A8B8QFQ4
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Position
7:complement(26895845..26901671)
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AA seq
758 aa
AA seq
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MKFEIEDVTVYFPYDNIYPEQYSYMVELKRALDARGHCLLEMPTGTGKTIALLSLITSYV
LSKPQSPLKLIYCTRTVHEMEKTLAELKKLHDYQVKHLGPAARILAVGLSSRKNLCVNPR
VLSAENRDSVDAGCRKLTASWVRALAERNPSVPTCEFFEEYERAGSGAVLPPGVYTLQDL
RAFGKQKGWCPYFLARHMVQFANVIVYSYQYLLDPKVAGIISKEMQRECVVVFDEAHNID
NVCIEALSVSVRRQTLEGATRNLHRMEQEIERFKATDEGRLRAEYQRLVEGLAQRGDLRV
NDTWLANPALPDDILKEAVPGNIRRADFFLRVLRRFVQYLKGRLETENVEKESPVAFVAS
VTNQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP
FDERMPDVQDPVLQLSCHDASLAIKPVFDRFQTVVITSGTLSPIDLYPRLLNFNPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSVVPDGIVCFFV
SYSYMDEIVNSWNESGILKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGIPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAVYIAREF
LRKMAQPYDKAGSGSKKTLLSQEDVEKMGDGSLNEMLY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcgaaatagaggacgtcactgtctacttcccctacgacaacatctacccggag
cagtactcgtacatggtggagctcaagcgcgccctcgacgcccgcggccactgcctcctc
gagatgcccaccggcaccggcaagaccattgccctcctctcactcatcaccagctacgtc
ctctccaagccccagtcccctctcaagctcatctactgcacccgcaccgtccacgagatg
gagaagaccctcgctgagctgaagaagctgcacgactaccaggtaaagcaccttggcccc
gccgccaggattcttgccgtcgggctatcgtcgcggaagaacctgtgcgtgaatccgagg
gtcctgtcggcggagaatcgcgactcggtggacgccggctgcaggaagctcaccgcgagc
tgggttagggctttggccgagaggaaccccagcgtgccgacctgcgagttcttcgaggag
tacgaaagggccgggtctggggcggtgttgccacccggagtttatacactgcaggatcta
agggcctttggcaaacagaaaggctggtgtccatacttcttggcccgccatatggtgcaa
tttgcaaatgttatcgtgtatagttatcagtacttgcttgacccaaaggtggctggcata
atatcaaaggaaatgcagagagaatgtgttgtggtgtttgatgaggcacataatattgat
aatgtatgtattgaagctcttagtgttagtgtgaggcgacaaacacttgaaggggctaca
aggaatcttcatcgaatggagcaggagattgagaggttcaaggccactgatgaaggtagg
ttgagagcagaatatcagaggctggttgagggtttggcccagagaggagacttgcgagtt
aatgatacctggcttgcaaatcctgccttgcctgatgatattttaaaggaagcagtgcca
gggaacattcgtcgagcagattttttcctacgcgtcttacgtagatttgtccaatatctg
aaaggccgcctagaaactgagaatgtagagaaggaaagccctgttgcttttgttgcctct
gttactaatcaagccggaatcgaccagaaaacattaaagttttgttatgatcgcctccat
tctctcatgctgactctagaaataactgatacagatgagtttttgcacatacaaacaata
tgtgattttgcaacacttgtggggacatatgcccgtggcttttctattataatcgagcct
tttgacgagagaatgccagatgtccaggatcctgtgctgcagcttagttgccatgatgct
tctctcgcgataaagcctgtatttgatcgtttccagacagtagttatcacatctggaact
ctcagtcctattgatctatatcctcgtcttctgaactttaatccagttgttagtcggagt
ttcacaatgtccttgacaagagactgcatatgcccaatggttcttactcgtgggagtgat
cagctaccggtcagtacaaaatttgacatgagaagtgatcttggtgttgtgagaaactac
gggaggcttttactggagatggtctctgttgttcccgatgggattgtgtgcttttttgtt
agttactcatacatggatgaaattgttaatagttggaatgaaagtgggattttgaaggaa
ataatgcaacataagcttgtctttattgagacacaggacgtggtggaaactacattggct
ctggacaactatcgcagggcttgtgattgcgggagaggtgctgtctttttctctgttgcc
aggggaaaggtagctgaaggaattgattttgaccgacattatggtagattagtgatcatg
tttggtattcccttccaatacacactgagcaaaatcttgctagcacggctggaatacctt
cgtgatacatttcagataaaggaaggagattttttaactttcgatgctttgaggcaagct
gctcaatgtgtgggccgagtgatccgctcaaaggctgactatggcatgatgatttttgct
gacaaaaggtatagccgtcatgacaagcgttctaaattgcctgggtggattttgtcccat
ctacgagatgcacatctcaatttgagcactgacatggctgtgtatatagcaagggagttc
cttcggaaaatggcacaaccatatgataaagctgggagtggtagtaagaaaacccttctg
tcgcaggaagacgtagagaagatgggtgatggcagcttgaacgaaatgttgtactga
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