Rhodamnia argentea (silver malletwood): 115752028
Help
Entry
115752028 CDS
T10595
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03022
Basal transcription factors
rarg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115752028
09124 Replication and repair
03420 Nucleotide excision repair
115752028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rarg03021
]
115752028
03036 Chromosome and associated proteins [BR:
rarg03036
]
115752028
03400 DNA repair and recombination proteins [BR:
rarg03400
]
115752028
Enzymes [BR:
rarg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115752028
Transcription machinery [BR:
rarg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115752028
Chromosome and associated proteins [BR:
rarg03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
115752028
DNA repair and recombination proteins [BR:
rarg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115752028
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
NAMPT_N
AAA_11
nSTAND3
Motif
Other DBs
NCBI-GeneID:
115752028
NCBI-ProteinID:
XP_030545910
UniProt:
A0A8B8QFQ4
LinkDB
All DBs
Position
7:complement(26895845..26901671)
Genome browser
AA seq
758 aa
AA seq
DB search
MKFEIEDVTVYFPYDNIYPEQYSYMVELKRALDARGHCLLEMPTGTGKTIALLSLITSYV
LSKPQSPLKLIYCTRTVHEMEKTLAELKKLHDYQVKHLGPAARILAVGLSSRKNLCVNPR
VLSAENRDSVDAGCRKLTASWVRALAERNPSVPTCEFFEEYERAGSGAVLPPGVYTLQDL
RAFGKQKGWCPYFLARHMVQFANVIVYSYQYLLDPKVAGIISKEMQRECVVVFDEAHNID
NVCIEALSVSVRRQTLEGATRNLHRMEQEIERFKATDEGRLRAEYQRLVEGLAQRGDLRV
NDTWLANPALPDDILKEAVPGNIRRADFFLRVLRRFVQYLKGRLETENVEKESPVAFVAS
VTNQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP
FDERMPDVQDPVLQLSCHDASLAIKPVFDRFQTVVITSGTLSPIDLYPRLLNFNPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSVVPDGIVCFFV
SYSYMDEIVNSWNESGILKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGIPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAVYIAREF
LRKMAQPYDKAGSGSKKTLLSQEDVEKMGDGSLNEMLY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcgaaatagaggacgtcactgtctacttcccctacgacaacatctacccggag
cagtactcgtacatggtggagctcaagcgcgccctcgacgcccgcggccactgcctcctc
gagatgcccaccggcaccggcaagaccattgccctcctctcactcatcaccagctacgtc
ctctccaagccccagtcccctctcaagctcatctactgcacccgcaccgtccacgagatg
gagaagaccctcgctgagctgaagaagctgcacgactaccaggtaaagcaccttggcccc
gccgccaggattcttgccgtcgggctatcgtcgcggaagaacctgtgcgtgaatccgagg
gtcctgtcggcggagaatcgcgactcggtggacgccggctgcaggaagctcaccgcgagc
tgggttagggctttggccgagaggaaccccagcgtgccgacctgcgagttcttcgaggag
tacgaaagggccgggtctggggcggtgttgccacccggagtttatacactgcaggatcta
agggcctttggcaaacagaaaggctggtgtccatacttcttggcccgccatatggtgcaa
tttgcaaatgttatcgtgtatagttatcagtacttgcttgacccaaaggtggctggcata
atatcaaaggaaatgcagagagaatgtgttgtggtgtttgatgaggcacataatattgat
aatgtatgtattgaagctcttagtgttagtgtgaggcgacaaacacttgaaggggctaca
aggaatcttcatcgaatggagcaggagattgagaggttcaaggccactgatgaaggtagg
ttgagagcagaatatcagaggctggttgagggtttggcccagagaggagacttgcgagtt
aatgatacctggcttgcaaatcctgccttgcctgatgatattttaaaggaagcagtgcca
gggaacattcgtcgagcagattttttcctacgcgtcttacgtagatttgtccaatatctg
aaaggccgcctagaaactgagaatgtagagaaggaaagccctgttgcttttgttgcctct
gttactaatcaagccggaatcgaccagaaaacattaaagttttgttatgatcgcctccat
tctctcatgctgactctagaaataactgatacagatgagtttttgcacatacaaacaata
tgtgattttgcaacacttgtggggacatatgcccgtggcttttctattataatcgagcct
tttgacgagagaatgccagatgtccaggatcctgtgctgcagcttagttgccatgatgct
tctctcgcgataaagcctgtatttgatcgtttccagacagtagttatcacatctggaact
ctcagtcctattgatctatatcctcgtcttctgaactttaatccagttgttagtcggagt
ttcacaatgtccttgacaagagactgcatatgcccaatggttcttactcgtgggagtgat
cagctaccggtcagtacaaaatttgacatgagaagtgatcttggtgttgtgagaaactac
gggaggcttttactggagatggtctctgttgttcccgatgggattgtgtgcttttttgtt
agttactcatacatggatgaaattgttaatagttggaatgaaagtgggattttgaaggaa
ataatgcaacataagcttgtctttattgagacacaggacgtggtggaaactacattggct
ctggacaactatcgcagggcttgtgattgcgggagaggtgctgtctttttctctgttgcc
aggggaaaggtagctgaaggaattgattttgaccgacattatggtagattagtgatcatg
tttggtattcccttccaatacacactgagcaaaatcttgctagcacggctggaatacctt
cgtgatacatttcagataaaggaaggagattttttaactttcgatgctttgaggcaagct
gctcaatgtgtgggccgagtgatccgctcaaaggctgactatggcatgatgatttttgct
gacaaaaggtatagccgtcatgacaagcgttctaaattgcctgggtggattttgtcccat
ctacgagatgcacatctcaatttgagcactgacatggctgtgtatatagcaagggagttc
cttcggaaaatggcacaaccatatgataaagctgggagtggtagtaagaaaacccttctg
tcgcaggaagacgtagagaagatgggtgatggcagcttgaacgaaatgttgtactga
DBGET
integrated database retrieval system
