Rhodamnia argentea (silver malletwood): 115752231
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Entry
115752231 CDS
T10595
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03018
RNA degradation
rarg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115752231
09123 Folding, sorting and degradation
03018 RNA degradation
115752231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115752231
03041 Spliceosome [BR:
rarg03041
]
115752231
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115752231
mRNA degradation factors
5'-3' decay
Lsm complex
115752231
Spliceosome [BR:
rarg03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
115752231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
115752231
NCBI-ProteinID:
XP_030546190
UniProt:
A0A8B8QGI8
LinkDB
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Position
6:30307048..30310215
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AA seq
98 aa
AA seq
DB search
MSTGPGLDSLVDQTISVITNDGRNIVGVLKGYDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEELDSNLDLSKLRAHPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactggccctggactcgattctctcgttgaccaaacaatatcggtcattacaaat
gatgggcgtaacattgtgggggtcttaaagggctatgaccaggcaacaaatatcattctt
gatgaatctcatgaacgtgtttactccacaaaggaaggcgtgcagcaactagtgcttggt
ctttacataataaggggtgataacataagcgttgttggagaactagatgaagagcttgat
tccaatctggacttgtccaagctgagagctcatccccttaagcctgtaattcattga
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