Rhodamnia argentea (silver malletwood): 115752499
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Entry
115752499 CDS
T10595
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115752499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115752499
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115752499
mRNA degradation factors
5'-3' decay
Decapping complex
115752499
SSDB
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GFIT
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NCBI-GeneID:
115752499
NCBI-ProteinID:
XP_030546569
UniProt:
A0A8B8QHB3
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Position
7:complement(8080859..8089199)
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AA seq
807 aa
AA seq
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MERSHSKDSKESRDSSSGSLFDASQYAFFGPNLVEEMELGELEDGVEDFPVFGPADDEYH
LFDKEEGGGLACLSEVDDLATTFAKLNRVVTGPRNPGVIGDRGSGSFSRESSSATDWAQD
GDFSSWLDPYSFDAENAQDGKRWSSQPSPRYADSKPLYRTSSYPQQQPHLHHFSSEPILV
PKSAFTSFPPPGSRSQQASPRNPNMLSLTAGSQLPFSAPIFSPLSNNNLQVAGLSHGLEF
GNNVPQFTPSGLPFSNRSQSHWVNQAGVLHGSQSGILKNIMLQQQLSHQNGFISPHLMSP
HQQLQHQRLHHSLQSSLAHYAALHSPLYSTHPSPSHKMMLGLSDVRDHRPKSSQRGKQSV
RFSHQGSELSSQKSDTISIQFRSKYMTSEEIESILKMQHAATHSNDPYIDDYYHQARLAN
KSSGSRSKQRFCPSHLRELPSRSRNSSSEQQSHLTADAVGRVPLSSVRRPRPLLEVDSLP
NSADGNSEQKVVEKPLEQEPMLAARITIEDSLCVLLDVDDIDRLLQFTQPQDGGTQLRRK
RQILLEGLAASLQLVDPLGKSGHTVGLGPKDDIVFLRLVSIPKGRKLLSRYLQLLFPGSE
LARIVCMTIFRHLRFLYGGLPSDPEAAETTMNLANTVSRCVSGMDLRALSACLVAVVCSS
EQPPLRPLGSAAGDGASVILKSVLERATDLLTGPHAPNSCSMPNRALWQASFNEFFALLT
KYCLAKYETIAQSILTQTQVSSEIIGSEATRAINREMPVELLRASLPHTDENQRKLLLDF
AQRSMPMNAFNARMGGSSQTNSESVRG
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggagagatcccactcgaaggattcgaaggaatcccgagatagctcctcaggttcgctc
ttcgatgcatcccaatatgcattttttggtccaaaccttgtggaagaaatggaattaggg
gagctagaagatggggtagaagacttccccgtgtttggacctgcagatgatgagtatcat
ttgtttgataaagaagagggtggcggtctggcatgtctatctgaagtggatgatctggcc
actacttttgctaagttgaaccgagtagtcactggaccaaggaacccaggtgtcatcggg
gatcgaggatcaggatctttctccagggaaagttcatcagccactgattgggcacaagat
ggagacttttcctcctggttggatccctattcatttgatgcagaaaatgctcaagatggc
aagagatggtcgtcacaaccttctcctcgttatgcggactcaaagcctttgtacagaacg
tcgtcctatcctcagcagcaaccccatctccatcacttctcaagtgaaccaattctggtg
cctaaatcggcattcacatcatttccacctcctgggagcagatctcagcaggcttcacct
cgaaacccaaacatgctctctttaactgctggatcgcagttgcctttctctgcaccaatc
ttctctcctttatctaacaacaatcttcaggttgctggtttatcccatgggcttgaattt
ggtaacaatgtgcctcaattcaccccttctggccttccttttagcaacaggtcacaaagc
cactgggtcaaccaagctggcgtacttcatggtagtcagtctggaatcttgaaaaacata
atgctacagcaacaattatctcatcaaaatgggtttatttccccacatctgatgtcacct
catcagcagctccaacatcaaaggcttcaccattcccttcagtcatctttggcccattat
gctgccctgcattccccactctacagcactcatccttcaccttcgcataaaatgatgcta
gggttgtctgatgttagggatcacagacccaaatcatcacaaagagggaaacagagcgta
cgcttttctcatcaaggatctgagctcagtagccagaaaagtgataccatttctatacag
ttcagatccaagtatatgacttctgaggagattgaaagtattcttaaaatgcagcatgct
gcaacccacagcaatgatccttacatagatgattattaccaccaagcacgtcttgccaat
aaatcttctgggtcaagatcgaagcagcgtttttgtccttcccatcttagagaactccct
tctcgatctcgaaatagttcttcagaacagcagtcccacctcactgcggatgctgttggg
agggttccattatcttctgttcgtaggcctcgccccctccttgaggttgattccctgcct
aattctgctgatggcaactctgagcagaaggttgtagagaagcctctggaacaggaaccg
atgcttgctgccagaattaccattgaggacagcctctgcgtcctccttgatgttgatgac
attgatcgcctgttgcagtttactcagccccaagatggtgggacccagttgaggcggaag
cggcagatccttctggaaggtttagctgcatcactccagcttgtggacccgctgggcaaa
agtggacacacagttgggctgggcccgaaggatgacattgtctttcttcggttggtttcc
atccctaagggcaggaagctcctatccaggtatctccagcttctcttcccaggcagtgag
ctcgctagaattgtatgcatgaccattttccgccacttgaggtttctctatggtggcctt
ccttctgatcctgaagcagctgagacaaccatgaatttagccaatactgtttcaaggtgt
gtcagtggaatggaccttcgtgcgctgagcgcatgtctcgttgctgttgtttgttcatct
gagcagccaccacttcggccccttggaagcgcagctggagatggcgcgtctgtgattctg
aaatctgttcttgaaagggcgaccgaccttttgactggtccccatgccccaaacagttgt
agcatgcccaatcgtgccctctggcaagcttccttcaatgagttctttgcactccttaca
aaatactgccttgcaaaatatgaaactatagctcaatcaatcttgacgcagacccaggtt
agctcagaaatcattggttcagaggcaaccagagcaataaaccgggaaatgcctgtggaa
cttttgcgtgctagtctccctcacactgacgaaaaccagcgtaagctcttgttggacttt
gctcaacgatccatgcctatgaatgcatttaatgcacgcatgggtgggagcagccaaaca
aactccgagtctgtaagggggtag
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