Rhodamnia argentea (silver malletwood): 115753545
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Entry
115753545 CDS
T10595
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog B-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03013
Nucleocytoplasmic transport
rarg03015
mRNA surveillance pathway
rarg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115753545
09122 Translation
03013 Nucleocytoplasmic transport
115753545
03015 mRNA surveillance pathway
115753545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115753545
03041 Spliceosome [BR:
rarg03041
]
115753545
03009 Ribosome biogenesis [BR:
rarg03009
]
115753545
03012 Translation factors [BR:
rarg03012
]
115753545
Enzymes [BR:
rarg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115753545
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115753545
mRNA cycle factors
Stress granule specific factors
115753545
Spliceosome [BR:
rarg03041
]
Complex C
Other components
EJC/TREX
115753545
Ribosome biogenesis [BR:
rarg03009
]
Eukaryotic type
90S particles
Helicases
115753545
Translation factors [BR:
rarg03012
]
Eukaryotic type
Initiation factors
eIF-4
115753545
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
AAA_22
NAT10_TcmA_helicase
TniB
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
115753545
NCBI-ProteinID:
XP_030548051
UniProt:
A0A8B8QLL4
LinkDB
All DBs
Position
3:28001273..28004378
Genome browser
AA seq
384 aa
AA seq
DB search
MATGPEVEAVATFDCMGLSDDILHGIYGHGFDKPSAIQQRAVVPIVQGRDVIAQAQSGTG
KTSTIALASCHIVDTSTRDVQVLILSPTRDLASQTERVVLAIGYYKNILAHACVGGKSMG
EDTRKLELGVHVVSGTPGRVLDMIKRRTLRTRAIKLLVLDEADEMLSRGFKDHIFDVYRY
LPPELQVVLVSATLPTEILEMTGRFMTDPIRIVVKRDELMLERVKQYFVSVEREEWKFDT
LCDIYDVCTISQGVIFCNTKRKVEWLAEKMRDCNFTVSFMHGDMPQRERDAVMAAFRCGA
TRLMITTDVWARGIDVEQVCLVVNYDLPNNRELYIHRVGRAGRFGRKGAVVNLVKDKEIQ
ILRDIEQYYGTTIAQCLEDLPDII
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggggccagaagtggaggccgtggcgaccttcgactgcatgggcctgagcgat
gatatcctccacggcatctatggccacgggttcgacaagccttccgcgattcaacagcga
gcagtggtgccgattgtccaaggccgagacgttattgctcaggcgcaatctggcactggc
aaaacttccaccattgccctcgcgtcttgccatatcgtggacacctccacaagagatgtg
caagtgctgattttgtcacctacgagggatttggcgagtcagacggagagagttgtgctg
gctattggttattacaagaacatactagcccatgcctgtgttggagggaagagcatgggc
gaagatacccggaaattggagctcggagttcatgtcgtgtctggaactcccggcagggtt
ctcgacatgataaagaggagaactcttcgtactagagctatcaaactcctagtccttgac
gaagctgatgagatgctgagcagaggatttaaggatcacatctttgacgtttacagatac
ctaccgccggagcttcaggttgtcttagtttcagcaacactccccactgagattctggag
atgacaggaagattcatgaccgatccgatacggattgttgtgaagcgtgatgagttgatg
ctggagcgcgtcaaacagtactttgtgtcagtggaaagagaagagtggaaattcgacact
ctgtgcgatatatacgacgtctgcactataagccaaggagtcatattctgcaacaccaag
cggaaggtggagtggcttgctgaaaagatgcgtgattgtaacttcactgtgtctttcatg
cacggtgacatgcctcaaagggagagagatgcagtaatggctgcatttcgatgtggggcg
actcggttgatgatcactaccgatgtgtgggctcgagggattgatgttgagcaggtttgt
cttgtcgtcaactatgaccttcctaacaacagagagctgtacatccatcgggttggtcga
gcaggccgttttgggcggaagggcgctgtggtaaatctggtcaaggacaaggaaatccag
attcttagagacatagaacagtactatggcaccactatagctcaatgtctggaggacctt
cctgatataatttga
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