Rhodamnia argentea (silver malletwood): 115753694
Help
Entry
115753694 CDS
T10595
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03013
Nucleocytoplasmic transport
rarg03015
mRNA surveillance pathway
rarg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115753694
09122 Translation
03013 Nucleocytoplasmic transport
115753694
03015 mRNA surveillance pathway
115753694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115753694
03041 Spliceosome [BR:
rarg03041
]
115753694
Enzymes [BR:
rarg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115753694
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115753694
Spliceosome [BR:
rarg03041
]
Complex C
Other components
EJC/TREX
115753694
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115753694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
115753694
NCBI-ProteinID:
XP_030548280
UniProt:
A0A8B8N087
LinkDB
All DBs
Position
4:9477986..9483760
Genome browser
AA seq
427 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEEDKAMDSASAKVNGEATKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIETVAGQVAALV
LCHTRELAYQICHEFERFSKYLPDIKIAVFYGGVNVRIHKELLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CHKFMQDPMEIYVDEAKLTLHGLVQHYIKLSEGEKNRKLNDLLDALDFNQVVIFVKSVNR
AAELNKLLVDCNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDTLNQVQARFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagagacgagggacaacgatgcgtacgaggaagagctcctcgattacgaagaagag
gaagacaaagccatggactcggcctccgctaaggtcaacggcgaagccaccaagaagggt
tacgttgggattcacagctcaggtttcagagacttccttttgaagccagagttacttcgt
gctattgtggactccggcttcgagcacccatctgaagtccaacacgaatgcattcctcaa
gctatattgggtatggatgtcatatgccaagcaaaatctgggatggggaaaaccgctgtt
tttgtgctgtcaagtttgcaacaaattgaaacggttgctgggcaagttgctgcacttgtt
ctctgtcacacgagggagttagcctatcagatctgtcatgagtttgagaggttcagtaag
tatttgccagatatcaagattgcagtcttttacggtggcgtcaatgtcagaatccacaag
gagctgctgaagaatgaatgcccccatattgttgttggcacacctggtagaattttggct
ctggcaagggacaaggacctttctttgaagaatgtgaggcatttcatccttgatgagtgt
gacaagatgctcgaatctctagacatgaggagagatgtgcaggagatattcaagatgacg
cctcatgataaacaagtcatgatgttttcagcaacactcagcaaggaaatccgcccggtt
tgccataagtttatgcaagatcctatggaaatatatgttgatgaggccaagttgaccctt
cacggtcttgtacagcactacatcaaattaagtgaaggggagaaaaaccgcaagctaaat
gaccttcttgatgcattggacttcaatcaagttgtaatcttcgtcaaaagtgtcaaccga
gcagctgagttaaacaagttactcgtggattgcaactttccttcaatatgcatccattct
ggcatgtcacaggaggaaaggttgacacggtacaaaggtttcaaagaaggacataaaagg
attcttgttgcgacagatttggtcggtcgggggattgacattgaacgtgttaatatcgtg
attaactatgacatgccagattctgccgacacttatctgcacagggttggtcgagctgga
aggtttggcactaaaggcctggcaatcacatttgtttcttctgcttcagattctgacaca
ctcaaccaggttcaagcaaggttcgaggtggatataaaggagcttcctgaacagatagat
acctccacgtacatgccgtcctag
DBGET
integrated database retrieval system
